Hb_030116_020

Information

Type -
Description -
Location Contig30116: 24957-37422
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13630g
description hypothetical protein
nr
ID XP_006374032.1
description hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
swissprot
ID F4KGN5
description Solute carrier family 40 member 2 OS=Arabidopsis thaliana GN=IREG2 PE=2 SV=1
trembl
ID U5FNP3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s13630g PE=4 SV=1
Gene Ontology
ID GO:0016021
description solute carrier family 40 member 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31716: 25043-25753 , PASA_asmbl_31717: 25795-26150 , PASA_asmbl_31718: 26473-27062 , PASA_asmbl_31721: 32882-35367 , PASA_asmbl_31722: 32882-37118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030116_020 0.0 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
2 Hb_003747_010 0.0679125998 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
3 Hb_001172_010 0.0725181938 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
4 Hb_000700_140 0.0728966795 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
5 Hb_000123_210 0.0739409824 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
6 Hb_033834_060 0.0739741551 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
7 Hb_106371_010 0.0811102845 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_002131_020 0.0814959431 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
9 Hb_006827_020 0.0815511228 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003090_080 0.0817306825 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
11 Hb_000160_040 0.0847384068 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
12 Hb_143629_110 0.0851400317 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
13 Hb_001894_150 0.0851476246 - - nucleoredoxin, putative [Ricinus communis]
14 Hb_002946_160 0.0871374785 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
15 Hb_000630_050 0.0880139957 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004429_100 0.0880311469 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
17 Hb_001143_160 0.0882633325 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
18 Hb_000983_150 0.0893373563 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
19 Hb_006586_050 0.0903989491 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
20 Hb_001140_350 0.0908273656 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]

Gene co-expression network

sample Hb_030116_020 Hb_030116_020 Hb_003747_010 Hb_003747_010 Hb_030116_020--Hb_003747_010 Hb_001172_010 Hb_001172_010 Hb_030116_020--Hb_001172_010 Hb_000700_140 Hb_000700_140 Hb_030116_020--Hb_000700_140 Hb_000123_210 Hb_000123_210 Hb_030116_020--Hb_000123_210 Hb_033834_060 Hb_033834_060 Hb_030116_020--Hb_033834_060 Hb_106371_010 Hb_106371_010 Hb_030116_020--Hb_106371_010 Hb_080313_010 Hb_080313_010 Hb_003747_010--Hb_080313_010 Hb_002163_010 Hb_002163_010 Hb_003747_010--Hb_002163_010 Hb_003747_010--Hb_001172_010 Hb_004586_180 Hb_004586_180 Hb_003747_010--Hb_004586_180 Hb_006586_050 Hb_006586_050 Hb_003747_010--Hb_006586_050 Hb_009627_010 Hb_009627_010 Hb_001172_010--Hb_009627_010 Hb_002304_090 Hb_002304_090 Hb_001172_010--Hb_002304_090 Hb_004429_100 Hb_004429_100 Hb_001172_010--Hb_004429_100 Hb_001172_010--Hb_033834_060 Hb_007520_030 Hb_007520_030 Hb_001172_010--Hb_007520_030 Hb_000160_040 Hb_000160_040 Hb_001172_010--Hb_000160_040 Hb_001493_030 Hb_001493_030 Hb_000700_140--Hb_001493_030 Hb_143629_110 Hb_143629_110 Hb_000700_140--Hb_143629_110 Hb_000700_140--Hb_000123_210 Hb_000367_010 Hb_000367_010 Hb_000700_140--Hb_000367_010 Hb_000700_140--Hb_106371_010 Hb_001143_160 Hb_001143_160 Hb_000123_210--Hb_001143_160 Hb_000011_200 Hb_000011_200 Hb_000123_210--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_006827_020 Hb_006827_020 Hb_000123_210--Hb_006827_020 Hb_123352_020 Hb_123352_020 Hb_000123_210--Hb_123352_020 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_004689_050 Hb_004689_050 Hb_033834_060--Hb_004689_050 Hb_033834_060--Hb_004429_100 Hb_033834_060--Hb_009627_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410 Hb_003090_080 Hb_003090_080 Hb_106371_010--Hb_003090_080 Hb_106371_010--Hb_000160_040 Hb_001790_020 Hb_001790_020 Hb_106371_010--Hb_001790_020 Hb_016898_010 Hb_016898_010 Hb_106371_010--Hb_016898_010 Hb_106371_010--Hb_033834_060 Hb_003952_150 Hb_003952_150 Hb_106371_010--Hb_003952_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.71391 2.93898 1.83837 3.44065 5.20072 5.35792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.98489 2.4848 3.53136 5.42975 1.57561

CAGE analysis