Hb_002163_010

Information

Type -
Description -
Location Contig2163: 12156-15790
Sequence    

Annotation

kegg
ID pop:POPTR_0002s21600g
description POPTRDRAFT_711401; hypothetical protein
nr
ID XP_012080630.1
description PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
swissprot
ID Q7Y175
description Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana GN=PUX5 PE=1 SV=1
trembl
ID A0A067KG40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13737 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22365: 12487-15769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002163_010 0.0 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
2 Hb_000594_040 0.0702371129 - - hypothetical protein L484_013922 [Morus notabilis]
3 Hb_003299_070 0.0711923343 - - AMP deaminase [Theobroma cacao]
4 Hb_031042_070 0.0722441877 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001633_040 0.0728597509 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
6 Hb_003935_030 0.0745714218 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
7 Hb_001454_320 0.0752534534 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
8 Hb_000244_220 0.0753890232 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
9 Hb_000120_610 0.0781077162 - - mitotic control protein dis3, putative [Ricinus communis]
10 Hb_005122_080 0.0785046557 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
11 Hb_003747_010 0.0804128964 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
12 Hb_000136_090 0.0806113246 - - programmed cell death protein, putative [Ricinus communis]
13 Hb_000300_360 0.0819623941 - - PREDICTED: exosome component 10 [Jatropha curcas]
14 Hb_010053_030 0.0819846087 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
15 Hb_002783_310 0.0823578505 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
16 Hb_001454_280 0.0835312052 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
17 Hb_000510_310 0.0839332816 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
18 Hb_007520_030 0.0841387967 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
19 Hb_004032_180 0.0848523626 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
20 Hb_030565_090 0.0851807377 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]

Gene co-expression network

sample Hb_002163_010 Hb_002163_010 Hb_000594_040 Hb_000594_040 Hb_002163_010--Hb_000594_040 Hb_003299_070 Hb_003299_070 Hb_002163_010--Hb_003299_070 Hb_031042_070 Hb_031042_070 Hb_002163_010--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_002163_010--Hb_001633_040 Hb_003935_030 Hb_003935_030 Hb_002163_010--Hb_003935_030 Hb_001454_320 Hb_001454_320 Hb_002163_010--Hb_001454_320 Hb_005260_010 Hb_005260_010 Hb_000594_040--Hb_005260_010 Hb_154114_010 Hb_154114_010 Hb_000594_040--Hb_154114_010 Hb_000664_070 Hb_000664_070 Hb_000594_040--Hb_000664_070 Hb_000418_140 Hb_000418_140 Hb_000594_040--Hb_000418_140 Hb_008147_040 Hb_008147_040 Hb_000594_040--Hb_008147_040 Hb_003299_070--Hb_003935_030 Hb_003299_070--Hb_001454_320 Hb_185679_010 Hb_185679_010 Hb_003299_070--Hb_185679_010 Hb_000109_100 Hb_000109_100 Hb_003299_070--Hb_000109_100 Hb_010695_020 Hb_010695_020 Hb_003299_070--Hb_010695_020 Hb_031042_070--Hb_001633_040 Hb_033883_060 Hb_033883_060 Hb_031042_070--Hb_033883_060 Hb_007982_070 Hb_007982_070 Hb_031042_070--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_031042_070--Hb_000300_360 Hb_007632_020 Hb_007632_020 Hb_031042_070--Hb_007632_020 Hb_001633_040--Hb_033883_060 Hb_001633_040--Hb_000300_360 Hb_001633_040--Hb_007982_070 Hb_030565_090 Hb_030565_090 Hb_001633_040--Hb_030565_090 Hb_005494_020 Hb_005494_020 Hb_003935_030--Hb_005494_020 Hb_000567_010 Hb_000567_010 Hb_003935_030--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_000768_110 Hb_000768_110 Hb_003935_030--Hb_000768_110 Hb_001492_010 Hb_001492_010 Hb_001454_320--Hb_001492_010 Hb_000648_100 Hb_000648_100 Hb_001454_320--Hb_000648_100 Hb_003124_130 Hb_003124_130 Hb_001454_320--Hb_003124_130 Hb_000160_290 Hb_000160_290 Hb_001454_320--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_001454_320--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_001454_320--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.4949 41.8249 17.0151 18.1695 39.9233 42.8615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.4323 17.6258 17.5365 37.9299 12.3137

CAGE analysis