Hb_185679_010

Information

Type -
Description -
Location Contig185679: 237-4277
Sequence    

Annotation

kegg
ID rcu:RCOM_0385670
description serine/threonine-protein kinase rio2, putative (EC:2.7.11.1)
nr
ID XP_002533337.1
description serine/threonine-protein kinase rio2, putative [Ricinus communis]
swissprot
ID Q54T05
description Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum GN=rio2 PE=3 SV=1
trembl
ID B9T518
description Serine/threonine-protein kinase rio2, putative OS=Ricinus communis GN=RCOM_0385670 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18195: 384-4145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185679_010 0.0 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
2 Hb_004108_140 0.0659749756 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
3 Hb_003935_030 0.0672516113 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
4 Hb_003299_070 0.0691362446 - - AMP deaminase [Theobroma cacao]
5 Hb_002044_060 0.0712070234 - - elongation factor ts, putative [Ricinus communis]
6 Hb_026099_010 0.0749571579 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
7 Hb_005914_060 0.075732562 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
8 Hb_000768_110 0.0781498813 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
9 Hb_000059_140 0.0825338024 - - rnase h, putative [Ricinus communis]
10 Hb_002960_160 0.0840284876 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
11 Hb_000645_150 0.0843899071 - - zinc finger protein, putative [Ricinus communis]
12 Hb_006913_040 0.086204978 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
13 Hb_063716_080 0.0883908518 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
14 Hb_001486_340 0.0888484798 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
15 Hb_000333_100 0.0898744436 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
16 Hb_009620_040 0.0903281804 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
17 Hb_000567_010 0.0907236388 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
18 Hb_142439_010 0.090743469 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
19 Hb_004586_180 0.0907796979 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
20 Hb_003581_120 0.0911149628 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]

Gene co-expression network

sample Hb_185679_010 Hb_185679_010 Hb_004108_140 Hb_004108_140 Hb_185679_010--Hb_004108_140 Hb_003935_030 Hb_003935_030 Hb_185679_010--Hb_003935_030 Hb_003299_070 Hb_003299_070 Hb_185679_010--Hb_003299_070 Hb_002044_060 Hb_002044_060 Hb_185679_010--Hb_002044_060 Hb_026099_010 Hb_026099_010 Hb_185679_010--Hb_026099_010 Hb_005914_060 Hb_005914_060 Hb_185679_010--Hb_005914_060 Hb_004108_140--Hb_026099_010 Hb_003994_240 Hb_003994_240 Hb_004108_140--Hb_003994_240 Hb_001936_020 Hb_001936_020 Hb_004108_140--Hb_001936_020 Hb_004108_140--Hb_003935_030 Hb_004370_030 Hb_004370_030 Hb_004108_140--Hb_004370_030 Hb_005494_020 Hb_005494_020 Hb_003935_030--Hb_005494_020 Hb_003935_030--Hb_003299_070 Hb_000567_010 Hb_000567_010 Hb_003935_030--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_000768_110 Hb_000768_110 Hb_003935_030--Hb_000768_110 Hb_001454_320 Hb_001454_320 Hb_003299_070--Hb_001454_320 Hb_000109_100 Hb_000109_100 Hb_003299_070--Hb_000109_100 Hb_002163_010 Hb_002163_010 Hb_003299_070--Hb_002163_010 Hb_010695_020 Hb_010695_020 Hb_003299_070--Hb_010695_020 Hb_002044_060--Hb_004370_030 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_000567_050 Hb_000567_050 Hb_002044_060--Hb_000567_050 Hb_002044_060--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_002044_060--Hb_002942_160 Hb_000789_080 Hb_000789_080 Hb_002044_060--Hb_000789_080 Hb_001221_040 Hb_001221_040 Hb_026099_010--Hb_001221_040 Hb_026099_010--Hb_004370_030 Hb_026099_010--Hb_000789_080 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_023386_040 Hb_023386_040 Hb_005914_060--Hb_023386_040 Hb_000926_190 Hb_000926_190 Hb_005914_060--Hb_000926_190 Hb_000179_030 Hb_000179_030 Hb_005914_060--Hb_000179_030 Hb_142439_010 Hb_142439_010 Hb_005914_060--Hb_142439_010 Hb_005914_060--Hb_000768_110 Hb_005914_060--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.01252 6.62808 3.13621 2.66389 9.12887 10.7857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.81947 4.94049 2.41799 5.62143 2.4709

CAGE analysis