Hb_001454_320

Information

Type -
Description -
Location Contig1454: 248663-255576
Sequence    

Annotation

kegg
ID pop:POPTR_0010s01650g
description POPTRDRAFT_725686; PP1/PP2A phosphatases pleiotropic regulator PRL2 family protein
nr
ID XP_012083957.1
description PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
swissprot
ID Q42384
description Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1
trembl
ID A0A067JV25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18891 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11794: 231387-255573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_320 0.0 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
2 Hb_001492_010 0.0558108235 - - PREDICTED: diacylglycerol kinase 3-like isoform X2 [Populus euphratica]
3 Hb_000648_100 0.0580007239 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
4 Hb_003124_130 0.0614592512 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
5 Hb_000160_290 0.0632544761 - - unnamed protein product [Vitis vinifera]
6 Hb_000796_190 0.064076259 - - hypothetical protein F383_31148 [Gossypium arboreum]
7 Hb_007558_120 0.0661510379 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_002304_090 0.0684768771 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
9 Hb_003299_070 0.0686610318 - - AMP deaminase [Theobroma cacao]
10 Hb_002078_100 0.0711856628 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
11 Hb_000300_360 0.0714208899 - - PREDICTED: exosome component 10 [Jatropha curcas]
12 Hb_000567_010 0.0724908943 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
13 Hb_000109_100 0.0725625266 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
14 Hb_000418_140 0.0727409326 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
15 Hb_000329_130 0.0733790556 - - beta-tubulin cofactor d, putative [Ricinus communis]
16 Hb_010053_030 0.0747453307 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
17 Hb_001140_350 0.0751714865 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
18 Hb_002163_010 0.0752534534 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
19 Hb_002235_160 0.075658088 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
20 Hb_000215_190 0.0768192894 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_001454_320 Hb_001454_320 Hb_001492_010 Hb_001492_010 Hb_001454_320--Hb_001492_010 Hb_000648_100 Hb_000648_100 Hb_001454_320--Hb_000648_100 Hb_003124_130 Hb_003124_130 Hb_001454_320--Hb_003124_130 Hb_000160_290 Hb_000160_290 Hb_001454_320--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_001454_320--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_001454_320--Hb_007558_120 Hb_000215_190 Hb_000215_190 Hb_001492_010--Hb_000215_190 Hb_000120_620 Hb_000120_620 Hb_001492_010--Hb_000120_620 Hb_000331_160 Hb_000331_160 Hb_001492_010--Hb_000331_160 Hb_001492_010--Hb_000160_290 Hb_001492_010--Hb_003124_130 Hb_000470_070 Hb_000470_070 Hb_000648_100--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_000648_100--Hb_002078_100 Hb_019654_040 Hb_019654_040 Hb_000648_100--Hb_019654_040 Hb_000923_080 Hb_000923_080 Hb_000648_100--Hb_000923_080 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_000567_010 Hb_000567_010 Hb_003124_130--Hb_000567_010 Hb_003124_130--Hb_000796_190 Hb_147737_010 Hb_147737_010 Hb_003124_130--Hb_147737_010 Hb_000158_130 Hb_000158_130 Hb_003124_130--Hb_000158_130 Hb_003124_130--Hb_000160_290 Hb_002174_020 Hb_002174_020 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040 Hb_000796_190--Hb_007558_120 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.6642 64.4056 39.9547 38.5867 74.9588 88.9247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.8678 20.3913 30.5148 52.4449 24.5058

CAGE analysis