Hb_002042_140

Information

Type -
Description -
Location Contig2042: 103181-114228
Sequence    

Annotation

kegg
ID rcu:RCOM_1431030
description hypothetical protein
nr
ID XP_012089095.1
description PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
swissprot
ID O04034
description Cation/calcium exchanger 5 OS=Arabidopsis thaliana GN=CCX5 PE=2 SV=1
trembl
ID A0A067JI30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23370 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation calcium exchanger 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20947: 104470-104736 , PASA_asmbl_20948: 107381-108152 , PASA_asmbl_20949: 108346-108525 , PASA_asmbl_20950: 108550-111833 , PASA_asmbl_20951: 111914-113912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_140 0.0 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
2 Hb_006831_110 0.0521948863 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
3 Hb_000002_040 0.0591481643 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
4 Hb_004128_050 0.0607253676 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
5 Hb_010695_020 0.0621727089 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
6 Hb_000743_040 0.0643018006 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
7 Hb_007558_120 0.0653986416 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_000107_500 0.0700307963 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
9 Hb_000283_070 0.0704323162 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
10 Hb_002221_050 0.0708888677 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
11 Hb_000160_290 0.0709181713 - - unnamed protein product [Vitis vinifera]
12 Hb_002304_090 0.0724449016 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
13 Hb_000071_030 0.0726079119 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
14 Hb_009620_050 0.0742155613 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
15 Hb_002174_020 0.074616274 - - ring finger protein, putative [Ricinus communis]
16 Hb_006252_020 0.074705626 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
17 Hb_000574_440 0.0758445369 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
18 Hb_000329_090 0.0759051574 - - arginase, putative [Ricinus communis]
19 Hb_003935_030 0.0768087727 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
20 Hb_000768_070 0.0772096713 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002042_140 Hb_002042_140 Hb_006831_110 Hb_006831_110 Hb_002042_140--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_002042_140--Hb_000002_040 Hb_004128_050 Hb_004128_050 Hb_002042_140--Hb_004128_050 Hb_010695_020 Hb_010695_020 Hb_002042_140--Hb_010695_020 Hb_000743_040 Hb_000743_040 Hb_002042_140--Hb_000743_040 Hb_007558_120 Hb_007558_120 Hb_002042_140--Hb_007558_120 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_005321_020 Hb_005321_020 Hb_006831_110--Hb_005321_020 Hb_000283_070 Hb_000283_070 Hb_006831_110--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_006831_110--Hb_009620_050 Hb_000107_500 Hb_000107_500 Hb_006831_110--Hb_000107_500 Hb_000002_040--Hb_000107_500 Hb_000794_050 Hb_000794_050 Hb_000002_040--Hb_000794_050 Hb_003609_030 Hb_003609_030 Hb_000002_040--Hb_003609_030 Hb_000617_240 Hb_000617_240 Hb_000002_040--Hb_000617_240 Hb_000139_090 Hb_000139_090 Hb_000002_040--Hb_000139_090 Hb_006252_020 Hb_006252_020 Hb_004128_050--Hb_006252_020 Hb_003785_040 Hb_003785_040 Hb_004128_050--Hb_003785_040 Hb_005489_080 Hb_005489_080 Hb_004128_050--Hb_005489_080 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120 Hb_000796_190 Hb_000796_190 Hb_010695_020--Hb_000796_190 Hb_010695_020--Hb_007558_120 Hb_003299_070 Hb_003299_070 Hb_010695_020--Hb_003299_070 Hb_000160_290 Hb_000160_290 Hb_010695_020--Hb_000160_290 Hb_003935_030 Hb_003935_030 Hb_010695_020--Hb_003935_030 Hb_000329_090 Hb_000329_090 Hb_000743_040--Hb_000329_090 Hb_000600_070 Hb_000600_070 Hb_000743_040--Hb_000600_070 Hb_003428_070 Hb_003428_070 Hb_000743_040--Hb_003428_070 Hb_000567_050 Hb_000567_050 Hb_000743_040--Hb_000567_050 Hb_000072_350 Hb_000072_350 Hb_000743_040--Hb_000072_350 Hb_010381_060 Hb_010381_060 Hb_000743_040--Hb_010381_060 Hb_007558_120--Hb_000796_190 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_000329_130 Hb_000329_130 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9425 15.694 8.0232 9.04453 18.7979 20.1701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4952 6.78172 10.3538 9.02503 9.02579

CAGE analysis