Hb_000139_090

Information

Type -
Description -
Location Contig139: 120542-127523
Sequence    

Annotation

kegg
ID rcu:RCOM_0677530
description ATP binding protein, putative
nr
ID XP_012069600.1
description PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
swissprot
ID Q94KE2
description Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN=TIC PE=1 SV=2
trembl
ID A0A067KVC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02154 PE=4 SV=1
Gene Ontology
ID GO:0009416
description protein time for coffee isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10619: 120568-127573 , PASA_asmbl_10620: 126031-126708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_090 0.0 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
2 Hb_000174_220 0.0522957561 - - cohesin subunit rad21, putative [Ricinus communis]
3 Hb_001247_070 0.0537346501 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
4 Hb_002524_040 0.0631498696 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
5 Hb_007576_120 0.0707868673 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
6 Hb_000002_040 0.0708639688 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
7 Hb_015807_070 0.0739207734 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
8 Hb_004543_030 0.0753698592 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
9 Hb_124315_020 0.0756115358 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_045793_010 0.0773660964 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
11 Hb_001718_090 0.07860955 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
12 Hb_000796_180 0.0790352127 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
13 Hb_003785_040 0.0793920985 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
14 Hb_001143_250 0.0807444226 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
15 Hb_000035_290 0.0809002811 - - RNA recognition motif-containing family protein [Populus trichocarpa]
16 Hb_000012_140 0.0809229599 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000169_130 0.0810315356 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
18 Hb_006847_040 0.0812915808 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
19 Hb_000025_360 0.0824698204 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_000107_500 0.0832997605 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_090 Hb_000139_090 Hb_000174_220 Hb_000174_220 Hb_000139_090--Hb_000174_220 Hb_001247_070 Hb_001247_070 Hb_000139_090--Hb_001247_070 Hb_002524_040 Hb_002524_040 Hb_000139_090--Hb_002524_040 Hb_007576_120 Hb_007576_120 Hb_000139_090--Hb_007576_120 Hb_000002_040 Hb_000002_040 Hb_000139_090--Hb_000002_040 Hb_015807_070 Hb_015807_070 Hb_000139_090--Hb_015807_070 Hb_000174_220--Hb_015807_070 Hb_002235_300 Hb_002235_300 Hb_000174_220--Hb_002235_300 Hb_045793_010 Hb_045793_010 Hb_000174_220--Hb_045793_010 Hb_003785_040 Hb_003785_040 Hb_000174_220--Hb_003785_040 Hb_000174_220--Hb_001247_070 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110 Hb_004543_030 Hb_004543_030 Hb_002524_040--Hb_004543_030 Hb_002524_040--Hb_007576_120 Hb_030565_090 Hb_030565_090 Hb_002524_040--Hb_030565_090 Hb_002524_040--Hb_001247_070 Hb_034243_020 Hb_034243_020 Hb_002524_040--Hb_034243_020 Hb_007576_120--Hb_004543_030 Hb_007576_120--Hb_034243_020 Hb_001493_040 Hb_001493_040 Hb_007576_120--Hb_001493_040 Hb_005539_090 Hb_005539_090 Hb_007576_120--Hb_005539_090 Hb_000012_140 Hb_000012_140 Hb_007576_120--Hb_000012_140 Hb_002042_140 Hb_002042_140 Hb_000002_040--Hb_002042_140 Hb_000107_500 Hb_000107_500 Hb_000002_040--Hb_000107_500 Hb_000794_050 Hb_000794_050 Hb_000002_040--Hb_000794_050 Hb_003609_030 Hb_003609_030 Hb_000002_040--Hb_003609_030 Hb_000617_240 Hb_000617_240 Hb_000002_040--Hb_000617_240 Hb_001021_170 Hb_001021_170 Hb_015807_070--Hb_001021_170 Hb_007416_180 Hb_007416_180 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_008500_010 Hb_008500_010 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.2295 64.7771 22.1703 16.1366 50.6182 58.5964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.9599 27.1059 40.1172 30.2531 37.5928

CAGE analysis