Hb_001247_070

Information

Type -
Description -
Location Contig1247: 42762-44876
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00680g
description POPTRDRAFT_773568; pentatricopeptide repeat-containing family protein
nr
ID XP_012088850.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
swissprot
ID Q9FXB9
description Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1
trembl
ID B9I6N6
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0013s00680g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07473: 44016-44245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
2 Hb_000139_090 0.0537346501 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
3 Hb_001268_350 0.0676073372 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
4 Hb_124315_020 0.0676894531 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001930_010 0.0694508875 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
6 Hb_002188_110 0.0697151922 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
7 Hb_000174_220 0.071602734 - - cohesin subunit rad21, putative [Ricinus communis]
8 Hb_000025_360 0.0717244344 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
9 Hb_183963_030 0.0725555904 - - DNA binding protein, putative [Ricinus communis]
10 Hb_015807_070 0.0731596762 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
11 Hb_000107_500 0.0742916635 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
12 Hb_001718_090 0.0762300543 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
13 Hb_010578_060 0.0770874838 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
14 Hb_000077_370 0.0773417452 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
15 Hb_001967_030 0.0785440666 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
16 Hb_000077_070 0.0788798642 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
17 Hb_002524_040 0.0798790984 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
18 Hb_006847_040 0.082141343 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
19 Hb_000304_050 0.083251336 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_004718_010 0.0834978385 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_070 Hb_001247_070 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220 Hb_000139_090--Hb_000174_220 Hb_002524_040 Hb_002524_040 Hb_000139_090--Hb_002524_040 Hb_007576_120 Hb_007576_120 Hb_000139_090--Hb_007576_120 Hb_000002_040 Hb_000002_040 Hb_000139_090--Hb_000002_040 Hb_015807_070 Hb_015807_070 Hb_000139_090--Hb_015807_070 Hb_004718_010 Hb_004718_010 Hb_001268_350--Hb_004718_010 Hb_000035_290 Hb_000035_290 Hb_001268_350--Hb_000035_290 Hb_002784_110 Hb_002784_110 Hb_001268_350--Hb_002784_110 Hb_005699_090 Hb_005699_090 Hb_001268_350--Hb_005699_090 Hb_014267_010 Hb_014267_010 Hb_001268_350--Hb_014267_010 Hb_124315_020--Hb_000139_090 Hb_003216_080 Hb_003216_080 Hb_124315_020--Hb_003216_080 Hb_124315_020--Hb_001930_010 Hb_001245_070 Hb_001245_070 Hb_124315_020--Hb_001245_070 Hb_000031_050 Hb_000031_050 Hb_124315_020--Hb_000031_050 Hb_000390_070 Hb_000390_070 Hb_001930_010--Hb_000390_070 Hb_001930_010--Hb_003216_080 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_000514_060 Hb_000514_060 Hb_001930_010--Hb_000514_060 Hb_183963_030 Hb_183963_030 Hb_002188_110--Hb_183963_030 Hb_000025_360 Hb_000025_360 Hb_002188_110--Hb_000025_360 Hb_000959_040 Hb_000959_040 Hb_002188_110--Hb_000959_040 Hb_007676_100 Hb_007676_100 Hb_002188_110--Hb_007676_100 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_000174_220--Hb_015807_070 Hb_002235_300 Hb_002235_300 Hb_000174_220--Hb_002235_300 Hb_045793_010 Hb_045793_010 Hb_000174_220--Hb_045793_010 Hb_003785_040 Hb_003785_040 Hb_000174_220--Hb_003785_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38181 1.56983 0.418722 0.388493 1.33844 1.38442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.657669 0.600949 1.14125 0.869552 0.706694

CAGE analysis