Hb_000390_070

Information

Type -
Description -
Location Contig390: 111075-122443
Sequence    

Annotation

kegg
ID rcu:RCOM_2156040
description hypothetical protein
nr
ID XP_012070252.1
description PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02566 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ring fyve phd zinc finger superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39077: 111079-111464 , PASA_asmbl_39078: 111466-111649 , PASA_asmbl_39081: 113889-115647 , PASA_asmbl_39082: 116238-122362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_070 0.0 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
2 Hb_000627_080 0.0563739485 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
3 Hb_007757_110 0.0671654169 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_001930_010 0.0709516 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
5 Hb_007586_030 0.0725728308 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
6 Hb_000244_250 0.0747400775 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
7 Hb_004055_040 0.0765633013 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
8 Hb_000005_380 0.077931961 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
9 Hb_123777_030 0.0790079557 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
10 Hb_000230_080 0.0824813369 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_005730_030 0.0833110731 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
12 Hb_000009_210 0.0833445866 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
13 Hb_124315_020 0.0833897521 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_001797_050 0.0834220938 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
15 Hb_033834_010 0.0848128176 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_006649_060 0.0858684877 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002986_130 0.0902748361 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
18 Hb_000514_060 0.0903072209 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
19 Hb_003216_080 0.0906988065 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
20 Hb_001771_130 0.0910340465 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_070 Hb_000390_070 Hb_000627_080 Hb_000627_080 Hb_000390_070--Hb_000627_080 Hb_007757_110 Hb_007757_110 Hb_000390_070--Hb_007757_110 Hb_001930_010 Hb_001930_010 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040 Hb_000627_080--Hb_004055_040 Hb_000627_080--Hb_000244_250 Hb_000627_080--Hb_001930_010 Hb_002255_070 Hb_002255_070 Hb_000627_080--Hb_002255_070 Hb_000915_050 Hb_000915_050 Hb_000627_080--Hb_000915_050 Hb_010175_020 Hb_010175_020 Hb_007757_110--Hb_010175_020 Hb_002307_100 Hb_002307_100 Hb_007757_110--Hb_002307_100 Hb_001584_150 Hb_001584_150 Hb_007757_110--Hb_001584_150 Hb_000152_820 Hb_000152_820 Hb_007757_110--Hb_000152_820 Hb_175338_030 Hb_175338_030 Hb_007757_110--Hb_175338_030 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_003216_080 Hb_003216_080 Hb_001930_010--Hb_003216_080 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_124315_020 Hb_124315_020 Hb_001930_010--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_001930_010--Hb_000514_060 Hb_000005_380 Hb_000005_380 Hb_007586_030--Hb_000005_380 Hb_007586_030--Hb_000244_250 Hb_000977_180 Hb_000977_180 Hb_007586_030--Hb_000977_180 Hb_006649_060 Hb_006649_060 Hb_007586_030--Hb_006649_060 Hb_123777_030 Hb_123777_030 Hb_007586_030--Hb_123777_030 Hb_002150_030 Hb_002150_030 Hb_007586_030--Hb_002150_030 Hb_000244_250--Hb_000005_380 Hb_000244_250--Hb_000915_050 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_002928_060 Hb_002928_060 Hb_004055_040--Hb_002928_060 Hb_005730_030 Hb_005730_030 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_001871_040 Hb_001871_040 Hb_004055_040--Hb_001871_040 Hb_004055_040--Hb_000244_250 Hb_004055_040--Hb_000915_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.139 36.2085 9.17284 11.5718 54.0203 60.8007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4864 20.6201 51.6269 28.5026 19.3498

CAGE analysis