Hb_001930_010

Information

Type -
Description -
Location Contig1930: 23249-29793
Sequence    

Annotation

kegg
ID rcu:RCOM_0521230
description DNA binding protein, putative
nr
ID XP_012070991.1
description PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01018 PE=4 SV=1
Gene Ontology
ID GO:0003682
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19278: 23130-29783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001930_010 0.0 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
2 Hb_001247_070 0.0694508875 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
3 Hb_000390_070 0.0709516 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
4 Hb_003216_080 0.075788234 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
5 Hb_000313_060 0.0769593539 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
6 Hb_124315_020 0.0778450014 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000514_060 0.0780949042 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
8 Hb_000627_080 0.0803535311 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_000244_250 0.0853386087 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
10 Hb_001584_150 0.0855791717 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
11 Hb_001439_140 0.0864751733 - - pattern formation protein, putative [Ricinus communis]
12 Hb_000107_500 0.0866440128 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
13 Hb_001700_040 0.0878869355 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
14 Hb_007757_110 0.0892825992 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
15 Hb_003531_060 0.089737128 - - unnamed protein product [Coffea canephora]
16 Hb_017075_010 0.092880047 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
17 Hb_002255_070 0.0933734429 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
18 Hb_000077_370 0.0957430274 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
19 Hb_000062_250 0.096337461 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
20 Hb_022408_010 0.0972643392 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001930_010 Hb_001930_010 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_000390_070 Hb_000390_070 Hb_001930_010--Hb_000390_070 Hb_003216_080 Hb_003216_080 Hb_001930_010--Hb_003216_080 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_124315_020 Hb_124315_020 Hb_001930_010--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_001930_010--Hb_000514_060 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_001247_070--Hb_124315_020 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220 Hb_000627_080 Hb_000627_080 Hb_000390_070--Hb_000627_080 Hb_007757_110 Hb_007757_110 Hb_000390_070--Hb_007757_110 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040 Hb_003938_080 Hb_003938_080 Hb_003216_080--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_003216_080--Hb_009411_010 Hb_001322_210 Hb_001322_210 Hb_003216_080--Hb_001322_210 Hb_003544_100 Hb_003544_100 Hb_003216_080--Hb_003544_100 Hb_000107_500 Hb_000107_500 Hb_003216_080--Hb_000107_500 Hb_001439_140 Hb_001439_140 Hb_000313_060--Hb_001439_140 Hb_000878_010 Hb_000878_010 Hb_000313_060--Hb_000878_010 Hb_000313_060--Hb_124315_020 Hb_000313_060--Hb_000514_060 Hb_000313_060--Hb_000390_070 Hb_124315_020--Hb_000139_090 Hb_124315_020--Hb_003216_080 Hb_001245_070 Hb_001245_070 Hb_124315_020--Hb_001245_070 Hb_000031_050 Hb_000031_050 Hb_124315_020--Hb_000031_050 Hb_000514_060--Hb_009411_010 Hb_000514_060--Hb_007757_110 Hb_001797_050 Hb_001797_050 Hb_000514_060--Hb_001797_050 Hb_000796_030 Hb_000796_030 Hb_000514_060--Hb_000796_030 Hb_002232_030 Hb_002232_030 Hb_000514_060--Hb_002232_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3282 22.9508 7.45227 8.5512 25.6516 27.5607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.99161 8.76599 28.0786 16.4993 13.6466

CAGE analysis