Hb_001245_070

Information

Type -
Description -
Location Contig1245: 121152-125432
Sequence    

Annotation

kegg
ID rcu:RCOM_1405990
description hypothetical protein
nr
ID XP_012071570.1
description PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04075 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07418: 124329-125339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001245_070 0.0 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
2 Hb_124315_020 0.0808043421 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000661_050 0.0826000048 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
4 Hb_175338_030 0.0842575013 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
5 Hb_000453_170 0.0847861278 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000392_300 0.0862744553 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
7 Hb_000244_250 0.0865987918 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
8 Hb_011316_050 0.0900112501 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
9 Hb_002783_260 0.0903318672 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
10 Hb_000195_020 0.0905120271 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
11 Hb_000317_020 0.0909166866 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
12 Hb_005054_180 0.0911455599 - - coronatine-insensitive 1 [Hevea brasiliensis]
13 Hb_000359_250 0.0913985919 - - PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
14 Hb_007757_110 0.0915204299 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
15 Hb_000977_070 0.0923383279 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
16 Hb_000031_050 0.0926431907 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
17 Hb_002496_030 0.0947556874 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
18 Hb_000030_010 0.0948863962 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
19 Hb_001541_020 0.095307109 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
20 Hb_005396_130 0.0971188085 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001245_070 Hb_001245_070 Hb_124315_020 Hb_124315_020 Hb_001245_070--Hb_124315_020 Hb_000661_050 Hb_000661_050 Hb_001245_070--Hb_000661_050 Hb_175338_030 Hb_175338_030 Hb_001245_070--Hb_175338_030 Hb_000453_170 Hb_000453_170 Hb_001245_070--Hb_000453_170 Hb_000392_300 Hb_000392_300 Hb_001245_070--Hb_000392_300 Hb_000244_250 Hb_000244_250 Hb_001245_070--Hb_000244_250 Hb_001247_070 Hb_001247_070 Hb_124315_020--Hb_001247_070 Hb_000139_090 Hb_000139_090 Hb_124315_020--Hb_000139_090 Hb_003216_080 Hb_003216_080 Hb_124315_020--Hb_003216_080 Hb_001930_010 Hb_001930_010 Hb_124315_020--Hb_001930_010 Hb_000031_050 Hb_000031_050 Hb_124315_020--Hb_000031_050 Hb_001736_040 Hb_001736_040 Hb_000661_050--Hb_001736_040 Hb_002307_100 Hb_002307_100 Hb_000661_050--Hb_002307_100 Hb_000317_020 Hb_000317_020 Hb_000661_050--Hb_000317_020 Hb_004724_200 Hb_004724_200 Hb_000661_050--Hb_004724_200 Hb_000661_050--Hb_000244_250 Hb_004934_090 Hb_004934_090 Hb_000661_050--Hb_004934_090 Hb_175338_030--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_175338_030--Hb_002477_160 Hb_010175_020 Hb_010175_020 Hb_175338_030--Hb_010175_020 Hb_007757_110 Hb_007757_110 Hb_175338_030--Hb_007757_110 Hb_000619_080 Hb_000619_080 Hb_175338_030--Hb_000619_080 Hb_004837_040 Hb_004837_040 Hb_175338_030--Hb_004837_040 Hb_011316_050 Hb_011316_050 Hb_000453_170--Hb_011316_050 Hb_002496_030 Hb_002496_030 Hb_000453_170--Hb_002496_030 Hb_006316_040 Hb_006316_040 Hb_000453_170--Hb_006316_040 Hb_004221_020 Hb_004221_020 Hb_000453_170--Hb_004221_020 Hb_000827_070 Hb_000827_070 Hb_000453_170--Hb_000827_070 Hb_000289_060 Hb_000289_060 Hb_000453_170--Hb_000289_060 Hb_006065_020 Hb_006065_020 Hb_000392_300--Hb_006065_020 Hb_006185_050 Hb_006185_050 Hb_000392_300--Hb_006185_050 Hb_048937_040 Hb_048937_040 Hb_000392_300--Hb_048937_040 Hb_000030_010 Hb_000030_010 Hb_000392_300--Hb_000030_010 Hb_000089_220 Hb_000089_220 Hb_000392_300--Hb_000089_220 Hb_000392_300--Hb_002496_030 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_000915_050 Hb_000915_050 Hb_000244_250--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.81709 4.16432 2.18147 1.36011 5.80636 6.4539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92131 3.63096 6.58959 2.10912 3.41437

CAGE analysis