Hb_003216_080

Information

Type -
Description -
Location Contig3216: 78566-81301
Sequence    

Annotation

kegg
ID cic:CICLE_v10014182mg
description hypothetical protein
nr
ID XP_012081436.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
swissprot
ID Q9LSL9
description Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
trembl
ID A0A067KCE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18479 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34000: 78689-78972 , PASA_asmbl_34001: 56656-104131 , PASA_asmbl_34010: 79687-79833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
2 Hb_003938_080 0.0590735563 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
3 Hb_009411_010 0.0699211858 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
4 Hb_001322_210 0.0714114764 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
5 Hb_003544_100 0.0745896978 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
6 Hb_000107_500 0.0747570061 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
7 Hb_001930_010 0.075788234 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
8 Hb_124315_020 0.0767769422 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000359_250 0.0777479749 - - PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
10 Hb_000101_240 0.0805131762 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
11 Hb_001700_040 0.0821450098 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
12 Hb_000283_070 0.0833718058 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
13 Hb_015026_050 0.0841873782 - - XPA-binding protein, putative [Ricinus communis]
14 Hb_000139_090 0.0843833993 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
15 Hb_011030_010 0.0849146338 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
16 Hb_001247_070 0.0852640794 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
17 Hb_000244_250 0.0865924666 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
18 Hb_001797_050 0.0872485087 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
19 Hb_002301_080 0.0879061907 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
20 Hb_000502_050 0.0885321513 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]

Gene co-expression network

sample Hb_003216_080 Hb_003216_080 Hb_003938_080 Hb_003938_080 Hb_003216_080--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_003216_080--Hb_009411_010 Hb_001322_210 Hb_001322_210 Hb_003216_080--Hb_001322_210 Hb_003544_100 Hb_003544_100 Hb_003216_080--Hb_003544_100 Hb_000107_500 Hb_000107_500 Hb_003216_080--Hb_000107_500 Hb_001930_010 Hb_001930_010 Hb_003216_080--Hb_001930_010 Hb_003938_080--Hb_009411_010 Hb_003938_080--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_009411_010--Hb_003544_100 Hb_009411_010--Hb_000101_240 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_009411_010--Hb_000502_050 Hb_000780_220 Hb_000780_220 Hb_001322_210--Hb_000780_220 Hb_002291_070 Hb_002291_070 Hb_001322_210--Hb_002291_070 Hb_002471_210 Hb_002471_210 Hb_001322_210--Hb_002471_210 Hb_000347_130 Hb_000347_130 Hb_001322_210--Hb_000347_130 Hb_007849_020 Hb_007849_020 Hb_001322_210--Hb_007849_020 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_006915_060 Hb_006915_060 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_000283_070 Hb_000283_070 Hb_000107_500--Hb_000283_070 Hb_001541_020 Hb_001541_020 Hb_000107_500--Hb_001541_020 Hb_006831_110 Hb_006831_110 Hb_000107_500--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_000107_500--Hb_000002_040 Hb_000510_310 Hb_000510_310 Hb_000107_500--Hb_000510_310 Hb_000025_360 Hb_000025_360 Hb_000107_500--Hb_000025_360 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_000390_070 Hb_000390_070 Hb_001930_010--Hb_000390_070 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_124315_020 Hb_124315_020 Hb_001930_010--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_001930_010--Hb_000514_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17872 4.35837 1.72332 1.76903 4.71046 7.2074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97121 2.47176 4.2629 2.79265 3.06186

CAGE analysis