Hb_000313_060

Information

Type -
Description -
Location Contig313: 49951-53386
Sequence    

Annotation

kegg
ID bvg:104890406
description uncharacterized LOC104890406
nr
ID CCA65974.1
description hypothetical protein [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCF7
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33132: 52443-52899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_060 0.0 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
2 Hb_001930_010 0.0769593539 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
3 Hb_001439_140 0.0832605669 - - pattern formation protein, putative [Ricinus communis]
4 Hb_000878_010 0.0849552816 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
5 Hb_124315_020 0.0897565358 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000514_060 0.0901659124 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
7 Hb_000390_070 0.092599485 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
8 Hb_007757_110 0.0946196793 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_001584_150 0.0948786859 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
10 Hb_000005_380 0.0979288439 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
11 Hb_008500_010 0.0992878133 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
12 Hb_003938_080 0.1001965072 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
13 Hb_009486_200 0.1006845847 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
14 Hb_000062_250 0.1010400721 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
15 Hb_000627_080 0.1017422112 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_004724_060 0.1034951697 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
17 Hb_017075_010 0.1044190605 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
18 Hb_003216_080 0.1058044112 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
19 Hb_002232_030 0.1069612912 - - Pinin, putative [Ricinus communis]
20 Hb_001247_070 0.1072432765 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000313_060 Hb_000313_060 Hb_001930_010 Hb_001930_010 Hb_000313_060--Hb_001930_010 Hb_001439_140 Hb_001439_140 Hb_000313_060--Hb_001439_140 Hb_000878_010 Hb_000878_010 Hb_000313_060--Hb_000878_010 Hb_124315_020 Hb_124315_020 Hb_000313_060--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_000313_060--Hb_000514_060 Hb_000390_070 Hb_000390_070 Hb_000313_060--Hb_000390_070 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_001930_010--Hb_000390_070 Hb_003216_080 Hb_003216_080 Hb_001930_010--Hb_003216_080 Hb_001930_010--Hb_124315_020 Hb_001930_010--Hb_000514_060 Hb_007586_030 Hb_007586_030 Hb_001439_140--Hb_007586_030 Hb_001439_140--Hb_001930_010 Hb_000193_310 Hb_000193_310 Hb_001439_140--Hb_000193_310 Hb_010417_050 Hb_010417_050 Hb_001439_140--Hb_010417_050 Hb_014267_010 Hb_014267_010 Hb_001439_140--Hb_014267_010 Hb_001700_040 Hb_001700_040 Hb_000878_010--Hb_001700_040 Hb_004724_060 Hb_004724_060 Hb_000878_010--Hb_004724_060 Hb_001322_210 Hb_001322_210 Hb_000878_010--Hb_001322_210 Hb_003938_080 Hb_003938_080 Hb_000878_010--Hb_003938_080 Hb_011318_010 Hb_011318_010 Hb_000878_010--Hb_011318_010 Hb_124315_020--Hb_001247_070 Hb_000139_090 Hb_000139_090 Hb_124315_020--Hb_000139_090 Hb_124315_020--Hb_003216_080 Hb_001245_070 Hb_001245_070 Hb_124315_020--Hb_001245_070 Hb_000031_050 Hb_000031_050 Hb_124315_020--Hb_000031_050 Hb_009411_010 Hb_009411_010 Hb_000514_060--Hb_009411_010 Hb_007757_110 Hb_007757_110 Hb_000514_060--Hb_007757_110 Hb_001797_050 Hb_001797_050 Hb_000514_060--Hb_001797_050 Hb_000796_030 Hb_000796_030 Hb_000514_060--Hb_000796_030 Hb_002232_030 Hb_002232_030 Hb_000514_060--Hb_002232_030 Hb_000627_080 Hb_000627_080 Hb_000390_070--Hb_000627_080 Hb_000390_070--Hb_007757_110 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13534 1.13738 0.363334 0.315841 1.08457 1.63361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.599239 0.381655 1.69205 0.671405 0.800956

CAGE analysis