Hb_007757_110

Information

Type -
Description -
Location Contig7757: 61532-76829
Sequence    

Annotation

kegg
ID rcu:RCOM_0401100
description hypothetical protein
nr
ID XP_012084519.1
description PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A067JU50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20228 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57782: 61410-76600 , PASA_asmbl_57784: 73064-73606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007757_110 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
2 Hb_010175_020 0.0575462387 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_002307_100 0.0590755658 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
4 Hb_001584_150 0.0606687769 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
5 Hb_000152_820 0.0623463671 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
6 Hb_175338_030 0.064667709 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
7 Hb_000390_070 0.0671654169 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
8 Hb_001797_050 0.0679607806 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
9 Hb_007586_030 0.069400548 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
10 Hb_000514_060 0.0748442803 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
11 Hb_000244_250 0.0748949975 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
12 Hb_000031_050 0.0753664789 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
13 Hb_001736_040 0.0754206848 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
14 Hb_001507_020 0.0755443868 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
15 Hb_001975_160 0.0758025256 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000317_020 0.0767444167 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
17 Hb_004724_060 0.0768234669 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
18 Hb_000577_010 0.0770426106 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
19 Hb_000953_010 0.0778485388 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
20 Hb_000005_380 0.0786134164 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007757_110 Hb_007757_110 Hb_010175_020 Hb_010175_020 Hb_007757_110--Hb_010175_020 Hb_002307_100 Hb_002307_100 Hb_007757_110--Hb_002307_100 Hb_001584_150 Hb_001584_150 Hb_007757_110--Hb_001584_150 Hb_000152_820 Hb_000152_820 Hb_007757_110--Hb_000152_820 Hb_175338_030 Hb_175338_030 Hb_007757_110--Hb_175338_030 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_010175_020--Hb_000152_820 Hb_010175_020--Hb_175338_030 Hb_010175_020--Hb_002307_100 Hb_000317_020 Hb_000317_020 Hb_010175_020--Hb_000317_020 Hb_000413_180 Hb_000413_180 Hb_010175_020--Hb_000413_180 Hb_002307_100--Hb_175338_030 Hb_002477_160 Hb_002477_160 Hb_002307_100--Hb_002477_160 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140 Hb_008500_010 Hb_008500_010 Hb_001584_150--Hb_008500_010 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_002311_040 Hb_002311_040 Hb_001584_150--Hb_002311_040 Hb_000152_820--Hb_000317_020 Hb_001736_040 Hb_001736_040 Hb_000152_820--Hb_001736_040 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_175338_030--Hb_002477_160 Hb_000619_080 Hb_000619_080 Hb_175338_030--Hb_000619_080 Hb_004837_040 Hb_004837_040 Hb_175338_030--Hb_004837_040 Hb_000627_080 Hb_000627_080 Hb_000390_070--Hb_000627_080 Hb_001930_010 Hb_001930_010 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.8763 28.323 7.85788 11.2515 37.1162 39.7388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.339 19.7128 43.0616 17.9758 15.1573

CAGE analysis