Hb_000661_050

Information

Type -
Description -
Location Contig661: 50648-57171
Sequence    

Annotation

kegg
ID rcu:RCOM_1020490
description protein binding protein, putative
nr
ID XP_012092651.1
description PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
swissprot
ID Q86YJ7
description Ankyrin repeat domain-containing protein 13B OS=Homo sapiens GN=ANKRD13B PE=1 SV=4
trembl
ID A0A067J996
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06412 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52949: 51051-52778 , PASA_asmbl_52950: 52788-56540 , PASA_asmbl_52951: 56740-57014
cDNA
(Sanger)
(ID:Location)		 003_L19.ab1: 51051-51831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_050 0.0 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
2 Hb_001736_040 0.0552509037 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
3 Hb_002307_100 0.0645468048 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
4 Hb_000317_020 0.0663988163 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
5 Hb_004724_200 0.0703057386 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
6 Hb_000244_250 0.0706553623 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
7 Hb_004934_090 0.0711210242 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
8 Hb_002477_160 0.071887478 - - hypothetical protein L484_013453 [Morus notabilis]
9 Hb_007586_030 0.0743136984 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
10 Hb_001301_200 0.0743551876 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
11 Hb_175338_030 0.0773295161 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
12 Hb_000152_820 0.0774666342 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
13 Hb_000034_050 0.0775376901 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
14 Hb_000184_110 0.0784392675 - - hypothetical protein F383_18769 [Gossypium arboreum]
15 Hb_000943_070 0.0791722369 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
16 Hb_007757_110 0.0795587315 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
17 Hb_000134_090 0.080247767 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
18 Hb_000030_010 0.0803357381 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
19 Hb_002039_010 0.080413036 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_001017_040 0.0809776837 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000661_050 Hb_000661_050 Hb_001736_040 Hb_001736_040 Hb_000661_050--Hb_001736_040 Hb_002307_100 Hb_002307_100 Hb_000661_050--Hb_002307_100 Hb_000317_020 Hb_000317_020 Hb_000661_050--Hb_000317_020 Hb_004724_200 Hb_004724_200 Hb_000661_050--Hb_004724_200 Hb_000244_250 Hb_000244_250 Hb_000661_050--Hb_000244_250 Hb_004934_090 Hb_004934_090 Hb_000661_050--Hb_004934_090 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_001736_040--Hb_000317_020 Hb_000152_820 Hb_000152_820 Hb_001736_040--Hb_000152_820 Hb_000827_070 Hb_000827_070 Hb_001736_040--Hb_000827_070 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070 Hb_175338_030 Hb_175338_030 Hb_002307_100--Hb_175338_030 Hb_002477_160 Hb_002477_160 Hb_002307_100--Hb_002477_160 Hb_007757_110 Hb_007757_110 Hb_002307_100--Hb_007757_110 Hb_010175_020 Hb_010175_020 Hb_002307_100--Hb_010175_020 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140 Hb_000317_020--Hb_000152_820 Hb_002876_110 Hb_002876_110 Hb_000317_020--Hb_002876_110 Hb_001975_160 Hb_001975_160 Hb_000317_020--Hb_001975_160 Hb_004600_040 Hb_004600_040 Hb_000317_020--Hb_004600_040 Hb_002030_030 Hb_002030_030 Hb_004724_200--Hb_002030_030 Hb_002811_360 Hb_002811_360 Hb_004724_200--Hb_002811_360 Hb_001301_200 Hb_001301_200 Hb_004724_200--Hb_001301_200 Hb_048937_040 Hb_048937_040 Hb_004724_200--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_004724_200--Hb_004109_090 Hb_001199_020 Hb_001199_020 Hb_004724_200--Hb_001199_020 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_000915_050 Hb_000915_050 Hb_000244_250--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.6661 21.7511 7.31901 13.2098 39.2638 46.712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7705 24.7292 36.2827 14.2728 16.5058

CAGE analysis