Hb_002876_110

Information

Type -
Description -
Location Contig2876: 88929-90455
Sequence    

Annotation

kegg
ID rcu:RCOM_0957040
description hypothetical protein
nr
ID XP_002534021.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID B9T702
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0957040 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein root primordium defective 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30031: 88763-89063 , PASA_asmbl_30033: 89919-90482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000317_020 0.0605205267 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
3 Hb_004600_040 0.0617116553 - - -
4 Hb_006332_020 0.0690008326 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
5 Hb_004724_200 0.0700063792 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
6 Hb_001736_040 0.0717227168 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
7 Hb_000392_300 0.0722394386 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
8 Hb_048937_040 0.0749849168 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
9 Hb_000808_230 0.0752882243 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
10 Hb_001545_120 0.0781061497 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
11 Hb_000107_620 0.0803704135 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
12 Hb_001776_140 0.0806096696 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_002477_280 0.0807954034 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
14 Hb_008695_180 0.0810761001 - - eukaryotic translation initiation factor [Hevea brasiliensis]
15 Hb_002496_030 0.0814334984 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
16 Hb_002027_250 0.0814545255 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000051_070 0.0817707816 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
18 Hb_000796_220 0.0821240972 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
19 Hb_000120_790 0.0832625095 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
20 Hb_044728_010 0.0837257631 - - -

Gene co-expression network

sample Hb_002876_110 Hb_002876_110 Hb_000317_020 Hb_000317_020 Hb_002876_110--Hb_000317_020 Hb_004600_040 Hb_004600_040 Hb_002876_110--Hb_004600_040 Hb_006332_020 Hb_006332_020 Hb_002876_110--Hb_006332_020 Hb_004724_200 Hb_004724_200 Hb_002876_110--Hb_004724_200 Hb_001736_040 Hb_001736_040 Hb_002876_110--Hb_001736_040 Hb_000392_300 Hb_000392_300 Hb_002876_110--Hb_000392_300 Hb_000152_820 Hb_000152_820 Hb_000317_020--Hb_000152_820 Hb_000317_020--Hb_001736_040 Hb_001975_160 Hb_001975_160 Hb_000317_020--Hb_001975_160 Hb_000661_050 Hb_000661_050 Hb_000317_020--Hb_000661_050 Hb_000317_020--Hb_004600_040 Hb_000538_200 Hb_000538_200 Hb_004600_040--Hb_000538_200 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_000421_260 Hb_000421_260 Hb_004600_040--Hb_000421_260 Hb_003097_150 Hb_003097_150 Hb_004600_040--Hb_003097_150 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_028872_140 Hb_028872_140 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002030_030 Hb_002030_030 Hb_004724_200--Hb_002030_030 Hb_002811_360 Hb_002811_360 Hb_004724_200--Hb_002811_360 Hb_001301_200 Hb_001301_200 Hb_004724_200--Hb_001301_200 Hb_048937_040 Hb_048937_040 Hb_004724_200--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_004724_200--Hb_004109_090 Hb_001199_020 Hb_001199_020 Hb_004724_200--Hb_001199_020 Hb_001736_040--Hb_000661_050 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_001736_040--Hb_000152_820 Hb_000827_070 Hb_000827_070 Hb_001736_040--Hb_000827_070 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070 Hb_006065_020 Hb_006065_020 Hb_000392_300--Hb_006065_020 Hb_006185_050 Hb_006185_050 Hb_000392_300--Hb_006185_050 Hb_000392_300--Hb_048937_040 Hb_000030_010 Hb_000030_010 Hb_000392_300--Hb_000030_010 Hb_000089_220 Hb_000089_220 Hb_000392_300--Hb_000089_220 Hb_002496_030 Hb_002496_030 Hb_000392_300--Hb_002496_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.24287 3.94849 2.53425 3.47624 9.55849 8.66133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.18019 8.80967 8.2814 4.80276 4.98893

CAGE analysis