Hb_006332_020

Information

Type -
Description -
Location Contig6332: 66500-68927
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05300g
description POPTRDRAFT_819808; hypothetical protein
nr
ID XP_012081714.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
swissprot
ID C0LGT1
description Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=2 SV=1
trembl
ID B9HFF3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05300g PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at5g10290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51866: 47919-69070
cDNA
(Sanger)
(ID:Location)		 011_I24.ab1: 68859-69070

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006332_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
2 Hb_000398_180 0.0555176309 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
3 Hb_004195_160 0.0618595247 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
4 Hb_028872_140 0.0638545317 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
5 Hb_001571_040 0.0680199271 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
6 Hb_001226_160 0.0681234766 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
7 Hb_002876_110 0.0690008326 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000210_180 0.0690226379 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_001377_290 0.0699335961 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
10 Hb_001454_210 0.0705695939 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
11 Hb_001301_160 0.0707794169 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
12 Hb_001488_330 0.0709307058 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
13 Hb_000554_020 0.0712651558 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
14 Hb_018838_030 0.0732826735 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001138_050 0.0733945217 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
16 Hb_002496_030 0.074068336 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
17 Hb_000032_290 0.075024709 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
18 Hb_096563_010 0.0751866364 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
19 Hb_000089_220 0.075546218 - - PREDICTED: protein FAM133-like [Populus euphratica]
20 Hb_002375_020 0.0758125723 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]

Gene co-expression network

sample Hb_006332_020 Hb_006332_020 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_028872_140 Hb_028872_140 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_004195_160--Hb_001377_290 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_000300_060 Hb_000300_060 Hb_001571_040--Hb_000300_060 Hb_001790_020 Hb_001790_020 Hb_001571_040--Hb_001790_020 Hb_000032_570 Hb_000032_570 Hb_001571_040--Hb_000032_570 Hb_066182_010 Hb_066182_010 Hb_001571_040--Hb_066182_010 Hb_012634_010 Hb_012634_010 Hb_001571_040--Hb_012634_010 Hb_000656_400 Hb_000656_400 Hb_001226_160--Hb_000656_400 Hb_000056_200 Hb_000056_200 Hb_001226_160--Hb_000056_200 Hb_002660_080 Hb_002660_080 Hb_001226_160--Hb_002660_080 Hb_096563_010 Hb_096563_010 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_003615_010 Hb_003615_010 Hb_001226_160--Hb_003615_010 Hb_000317_020 Hb_000317_020 Hb_002876_110--Hb_000317_020 Hb_004600_040 Hb_004600_040 Hb_002876_110--Hb_004600_040 Hb_004724_200 Hb_004724_200 Hb_002876_110--Hb_004724_200 Hb_001736_040 Hb_001736_040 Hb_002876_110--Hb_001736_040 Hb_000392_300 Hb_000392_300 Hb_002876_110--Hb_000392_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.8523 21.7398 12.4996 16.7263 37.5928 47.2012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.8081 50.9916 42.7296 21.3831 16.1744

CAGE analysis