Hb_015306_020

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig15306: 22269-28658
Sequence    

Annotation

kegg
ID rcu:RCOM_0519910
description Zuotin, putative
nr
ID XP_012075001.1
description PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
swissprot
ID Q7TQ20
description DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2 PE=2 SV=1
trembl
ID A0A067LN92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11837 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dnaj homolog subfamily c member 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13162: 22371-23020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015306_020 0.0 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
2 Hb_001454_210 0.0479453949 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
3 Hb_002890_340 0.0581582933 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
4 Hb_028872_140 0.0597692195 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
5 Hb_001789_090 0.0625073115 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
6 Hb_009111_050 0.0643584085 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
7 Hb_004046_010 0.0658010262 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
8 Hb_000062_240 0.0669871691 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
9 Hb_011918_080 0.067179354 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
10 Hb_007951_050 0.0673621837 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000421_260 0.0686246389 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
12 Hb_002811_360 0.0697019604 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
13 Hb_000190_140 0.0717846296 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
14 Hb_005062_070 0.0723168779 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
15 Hb_015001_020 0.074004056 - - PREDICTED: la-related protein 6B [Jatropha curcas]
16 Hb_033642_010 0.0747175035 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
17 Hb_004724_200 0.0757839084 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
18 Hb_002016_110 0.0759720705 - - transducin family protein [Populus trichocarpa]
19 Hb_002039_010 0.0772510941 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_000754_060 0.0781403926 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_015306_020 Hb_015306_020 Hb_001454_210 Hb_001454_210 Hb_015306_020--Hb_001454_210 Hb_002890_340 Hb_002890_340 Hb_015306_020--Hb_002890_340 Hb_028872_140 Hb_028872_140 Hb_015306_020--Hb_028872_140 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_009111_050 Hb_009111_050 Hb_015306_020--Hb_009111_050 Hb_004046_010 Hb_004046_010 Hb_015306_020--Hb_004046_010 Hb_001454_210--Hb_028872_140 Hb_005062_070 Hb_005062_070 Hb_001454_210--Hb_005062_070 Hb_001454_210--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_001454_210--Hb_002811_360 Hb_001030_120 Hb_001030_120 Hb_001454_210--Hb_001030_120 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_002890_340--Hb_004046_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_002890_340--Hb_009111_050 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_028872_140--Hb_009111_050 Hb_028872_140--Hb_002811_360 Hb_000802_080 Hb_000802_080 Hb_001789_090--Hb_000802_080 Hb_000062_240 Hb_000062_240 Hb_001789_090--Hb_000062_240 Hb_000291_110 Hb_000291_110 Hb_001789_090--Hb_000291_110 Hb_001789_090--Hb_002811_360 Hb_000406_220 Hb_000406_220 Hb_001789_090--Hb_000406_220 Hb_009111_050--Hb_033642_010 Hb_009111_050--Hb_001030_120 Hb_000190_140 Hb_000190_140 Hb_009111_050--Hb_000190_140 Hb_004046_010--Hb_005062_070 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_000446_090 Hb_000446_090 Hb_004046_010--Hb_000446_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4738 8.7811 3.41543 6.91855 18.4604 26.2027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1967 17.0996 25.7759 12.0931 7.29214

CAGE analysis