Hb_000802_080

Information

Type -
Description -
Location Contig802: 100276-101538
Sequence    

Annotation

kegg
ID rcu:RCOM_0631070
description hypothetical protein
nr
ID XP_012072137.1
description PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
swissprot
ID Q9FNK5
description F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1
trembl
ID A0A067KSL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04641 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58831: 99311-101620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000802_080 0.0 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
2 Hb_001789_090 0.0557280665 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
3 Hb_002811_360 0.06975525 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
4 Hb_001366_190 0.0718445951 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
5 Hb_001663_030 0.0747893921 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
6 Hb_001301_200 0.077705791 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
7 Hb_023344_030 0.0777349962 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
8 Hb_004724_200 0.0789221402 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
9 Hb_000062_240 0.0790016697 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
10 Hb_015306_020 0.0818293326 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
11 Hb_000245_130 0.082842967 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
12 Hb_000418_100 0.0838247221 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
13 Hb_009838_100 0.0840838124 - - hypothetical protein RCOM_1217340 [Ricinus communis]
14 Hb_000062_550 0.0876650012 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
15 Hb_181235_010 0.0879817656 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
16 Hb_003847_080 0.0888582386 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
17 Hb_028872_140 0.0896028957 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
18 Hb_000291_110 0.0897645206 - - eukaryotic translation initiation factor [Hevea brasiliensis]
19 Hb_002030_030 0.0900451453 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
20 Hb_005993_020 0.0900940308 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]

Gene co-expression network

sample Hb_000802_080 Hb_000802_080 Hb_001789_090 Hb_001789_090 Hb_000802_080--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000802_080--Hb_002811_360 Hb_001366_190 Hb_001366_190 Hb_000802_080--Hb_001366_190 Hb_001663_030 Hb_001663_030 Hb_000802_080--Hb_001663_030 Hb_001301_200 Hb_001301_200 Hb_000802_080--Hb_001301_200 Hb_023344_030 Hb_023344_030 Hb_000802_080--Hb_023344_030 Hb_000062_240 Hb_000062_240 Hb_001789_090--Hb_000062_240 Hb_015306_020 Hb_015306_020 Hb_001789_090--Hb_015306_020 Hb_000291_110 Hb_000291_110 Hb_001789_090--Hb_000291_110 Hb_001789_090--Hb_002811_360 Hb_000406_220 Hb_000406_220 Hb_001789_090--Hb_000406_220 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_028872_140 Hb_028872_140 Hb_002811_360--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_002811_360--Hb_001454_210 Hb_002811_360--Hb_000062_240 Hb_002811_360--Hb_001301_200 Hb_000398_180 Hb_000398_180 Hb_001366_190--Hb_000398_180 Hb_007508_070 Hb_007508_070 Hb_001366_190--Hb_007508_070 Hb_001366_190--Hb_028872_140 Hb_001366_190--Hb_001454_210 Hb_005305_080 Hb_005305_080 Hb_001366_190--Hb_005305_080 Hb_000577_010 Hb_000577_010 Hb_001663_030--Hb_000577_010 Hb_003994_240 Hb_003994_240 Hb_001663_030--Hb_003994_240 Hb_007163_090 Hb_007163_090 Hb_001663_030--Hb_007163_090 Hb_001663_030--Hb_001789_090 Hb_000260_220 Hb_000260_220 Hb_001663_030--Hb_000260_220 Hb_001301_200--Hb_007163_090 Hb_001301_200--Hb_023344_030 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_023344_030--Hb_007163_090 Hb_007059_010 Hb_007059_010 Hb_023344_030--Hb_007059_010 Hb_004032_150 Hb_004032_150 Hb_023344_030--Hb_004032_150 Hb_000051_070 Hb_000051_070 Hb_023344_030--Hb_000051_070 Hb_005170_040 Hb_005170_040 Hb_023344_030--Hb_005170_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.61 55.8725 12.7206 54.7252 95.1758 111.239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.0497 72.7284 94.588 58.3471 29.289

CAGE analysis