Hb_000406_220

Information

Type -
Description -
Location Contig406: 195488-200062
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04700g
description hypothetical protein
nr
ID XP_006382713.1
description hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID U5GAR2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s04700g PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40289: 195651-200771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_220 0.0 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
2 Hb_000554_020 0.0682493641 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
3 Hb_000032_290 0.0682879473 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
4 Hb_181235_010 0.0709032428 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
5 Hb_001789_090 0.0738676708 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
6 Hb_011161_010 0.0771728347 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
7 Hb_002810_020 0.0772915572 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
8 Hb_002154_030 0.0782956108 - - RNA binding protein, putative [Ricinus communis]
9 Hb_000022_250 0.0825232049 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
10 Hb_006922_110 0.0836470935 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
11 Hb_015306_020 0.0846002906 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
12 Hb_000200_050 0.0847714671 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_004128_060 0.0850947495 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
14 Hb_000062_240 0.0853454415 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
15 Hb_003777_330 0.0861823594 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
16 Hb_001720_050 0.0869839901 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
17 Hb_029584_130 0.0870761683 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
18 Hb_000787_110 0.0877299053 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
19 Hb_000291_110 0.0879603745 - - eukaryotic translation initiation factor [Hevea brasiliensis]
20 Hb_028872_140 0.0879979345 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000406_220 Hb_000406_220 Hb_000554_020 Hb_000554_020 Hb_000406_220--Hb_000554_020 Hb_000032_290 Hb_000032_290 Hb_000406_220--Hb_000032_290 Hb_181235_010 Hb_181235_010 Hb_000406_220--Hb_181235_010 Hb_001789_090 Hb_001789_090 Hb_000406_220--Hb_001789_090 Hb_011161_010 Hb_011161_010 Hb_000406_220--Hb_011161_010 Hb_002810_020 Hb_002810_020 Hb_000406_220--Hb_002810_020 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000554_020--Hb_000032_290 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_018838_030 Hb_018838_030 Hb_000032_290--Hb_018838_030 Hb_000032_290--Hb_181235_010 Hb_000032_290--Hb_006332_020 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_000062_240 Hb_000062_240 Hb_181235_010--Hb_000062_240 Hb_000802_080 Hb_000802_080 Hb_001789_090--Hb_000802_080 Hb_001789_090--Hb_000062_240 Hb_015306_020 Hb_015306_020 Hb_001789_090--Hb_015306_020 Hb_000291_110 Hb_000291_110 Hb_001789_090--Hb_000291_110 Hb_002811_360 Hb_002811_360 Hb_001789_090--Hb_002811_360 Hb_011161_010--Hb_002810_020 Hb_011161_010--Hb_002154_030 Hb_004128_060 Hb_004128_060 Hb_011161_010--Hb_004128_060 Hb_011161_010--Hb_181235_010 Hb_011161_010--Hb_000032_290 Hb_000022_250 Hb_000022_250 Hb_002810_020--Hb_000022_250 Hb_002810_020--Hb_181235_010 Hb_002810_020--Hb_002154_030 Hb_002810_020--Hb_002477_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7347 13.9454 3.6688 7.59609 18.1104 28.9011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9248 25.567 26.8283 12.9744 4.7957

CAGE analysis