Hb_002154_030

Information

Type -
Description -
Location Contig2154: 26911-31327
Sequence    

Annotation

kegg
ID rcu:RCOM_1620530
description RNA binding protein, putative
nr
ID XP_002512070.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LMX5
description Ninja-family protein AFP2 OS=Arabidopsis thaliana GN=AFP2 PE=1 SV=1
trembl
ID B9RED1
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1620530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22274: 26880-30412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002154_030 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_181235_010 0.0518113052 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
3 Hb_000207_390 0.065375476 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
4 Hb_000062_240 0.0694036103 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
5 Hb_000803_190 0.075534975 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
6 Hb_001301_200 0.0755815953 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
7 Hb_007163_090 0.0768439649 - - PREDICTED: protein spt2-like [Jatropha curcas]
8 Hb_000406_220 0.0782956108 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
9 Hb_004204_080 0.0788129234 - - diacylglycerol kinase, theta, putative [Ricinus communis]
10 Hb_002307_100 0.0791914946 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
11 Hb_001720_050 0.0802724739 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
12 Hb_002477_030 0.0802911803 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
13 Hb_000152_820 0.0804807026 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
14 Hb_002810_020 0.0821871686 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
15 Hb_000418_100 0.0836552767 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
16 Hb_003777_330 0.0843890757 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
17 Hb_023344_030 0.0845183112 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
18 Hb_001789_090 0.0846372214 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
19 Hb_002811_360 0.0850584478 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
20 Hb_000953_010 0.085154561 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_002154_030 Hb_002154_030 Hb_181235_010 Hb_181235_010 Hb_002154_030--Hb_181235_010 Hb_000207_390 Hb_000207_390 Hb_002154_030--Hb_000207_390 Hb_000062_240 Hb_000062_240 Hb_002154_030--Hb_000062_240 Hb_000803_190 Hb_000803_190 Hb_002154_030--Hb_000803_190 Hb_001301_200 Hb_001301_200 Hb_002154_030--Hb_001301_200 Hb_007163_090 Hb_007163_090 Hb_002154_030--Hb_007163_090 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_181235_010--Hb_000062_240 Hb_000032_290 Hb_000032_290 Hb_181235_010--Hb_000032_290 Hb_000406_220 Hb_000406_220 Hb_181235_010--Hb_000406_220 Hb_000207_390--Hb_007163_090 Hb_001797_050 Hb_001797_050 Hb_000207_390--Hb_001797_050 Hb_002200_130 Hb_002200_130 Hb_000207_390--Hb_002200_130 Hb_000207_390--Hb_001301_200 Hb_000207_390--Hb_000803_190 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020 Hb_004734_060 Hb_004734_060 Hb_000803_190--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_000803_190--Hb_033152_080 Hb_000953_010 Hb_000953_010 Hb_000803_190--Hb_000953_010 Hb_000803_190--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_007163_090--Hb_001797_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.16707 6.7767 2.64767 4.24272 10.3025 13.56
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47584 8.13622 11.8451 4.80754 2.33047

CAGE analysis