Hb_001226_030

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig1226: 56842-64315
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05470g
description POPTRDRAFT_668840; PHD finger family protein
nr
ID XP_012077221.1
description PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
swissprot
ID Q5XEM9
description PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1
trembl
ID A0A067KCV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07622 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06853: 57027-64313 , PASA_asmbl_06854: 57957-58319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_030 0.0 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
2 Hb_007163_090 0.0484101121 - - PREDICTED: protein spt2-like [Jatropha curcas]
3 Hb_123352_020 0.0672847967 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
4 Hb_000768_040 0.0682173913 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
5 Hb_000577_010 0.0729664437 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
6 Hb_000487_290 0.0730326851 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
7 Hb_004724_060 0.0731792813 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
8 Hb_005731_030 0.0733917011 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
9 Hb_143629_210 0.0752741929 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
10 Hb_001301_200 0.076134526 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
11 Hb_001797_050 0.0768092954 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
12 Hb_004032_150 0.0769504399 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
13 Hb_003464_060 0.0788431642 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
14 Hb_001489_150 0.0799134387 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
15 Hb_023344_030 0.0819397889 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
16 Hb_181235_010 0.0820304596 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
17 Hb_004684_010 0.0827916578 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
18 Hb_000803_190 0.0845855411 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
19 Hb_005532_050 0.0847161658 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
20 Hb_000820_170 0.0854528091 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]

Gene co-expression network

sample Hb_001226_030 Hb_001226_030 Hb_007163_090 Hb_007163_090 Hb_001226_030--Hb_007163_090 Hb_123352_020 Hb_123352_020 Hb_001226_030--Hb_123352_020 Hb_000768_040 Hb_000768_040 Hb_001226_030--Hb_000768_040 Hb_000577_010 Hb_000577_010 Hb_001226_030--Hb_000577_010 Hb_000487_290 Hb_000487_290 Hb_001226_030--Hb_000487_290 Hb_004724_060 Hb_004724_060 Hb_001226_030--Hb_004724_060 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_007163_090--Hb_000577_010 Hb_007163_090--Hb_123352_020 Hb_001797_050 Hb_001797_050 Hb_007163_090--Hb_001797_050 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_123352_020--Hb_000487_290 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_005731_030 Hb_005731_030 Hb_123352_020--Hb_005731_030 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260 Hb_003464_060 Hb_003464_060 Hb_000768_040--Hb_003464_060 Hb_002603_120 Hb_002603_120 Hb_000768_040--Hb_002603_120 Hb_001021_170 Hb_001021_170 Hb_000768_040--Hb_001021_170 Hb_004684_010 Hb_004684_010 Hb_000768_040--Hb_004684_010 Hb_004355_020 Hb_004355_020 Hb_000768_040--Hb_004355_020 Hb_000577_010--Hb_004724_060 Hb_001663_030 Hb_001663_030 Hb_000577_010--Hb_001663_030 Hb_000577_010--Hb_003464_060 Hb_000577_010--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000487_290--Hb_005188_050 Hb_000827_070 Hb_000827_070 Hb_000487_290--Hb_000827_070 Hb_000487_290--Hb_005731_030 Hb_000025_360 Hb_000025_360 Hb_000487_290--Hb_000025_360 Hb_000487_290--Hb_004724_060 Hb_004724_060--Hb_001797_050 Hb_004724_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004724_060--Hb_000820_170 Hb_008500_010 Hb_008500_010 Hb_004724_060--Hb_008500_010 Hb_004724_060--Hb_123352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.3238 79.5538 33.9963 41.5662 76.6446 121.708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.5285 59.8051 90.392 52.4839 35.2671

CAGE analysis