Hb_001301_200

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1301: 136987-147697
Sequence    

Annotation

kegg
ID rcu:RCOM_0585530
description Disease resistance protein RPS2, putative (EC:3.1.3.16)
nr
ID XP_002522965.1
description Disease resistance protein RPS2, putative [Ricinus communis]
swissprot
ID Q93W34
description Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana GN=RBP45C PE=2 SV=1
trembl
ID B9SAE6
description Disease resistance protein RPS2, putative OS=Ricinus communis GN=RCOM_0585530 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09018: 138258-138571 , PASA_asmbl_09021: 140626-140904 , PASA_asmbl_09022: 142725-147640 , PASA_asmbl_09023: 142725-147642 , PASA_asmbl_09025: 144281-145091 , PASA_asmbl_09026: 145146-145254
cDNA
(Sanger)
(ID:Location)		 031_J02.ab1: 142730-143977 , 053_P23.ab1: 142725-143939

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_200 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
2 Hb_007163_090 0.0522929594 - - PREDICTED: protein spt2-like [Jatropha curcas]
3 Hb_023344_030 0.0546162708 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
4 Hb_004724_200 0.0565287783 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
5 Hb_004447_060 0.0569968612 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
6 Hb_001680_010 0.0582204841 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
7 Hb_048937_040 0.0587553686 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
8 Hb_005532_050 0.0606125002 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_005993_020 0.0633680465 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
10 Hb_002811_360 0.0647381211 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
11 Hb_002200_130 0.0655763609 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
12 Hb_001047_030 0.066007169 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
13 Hb_001797_050 0.0665109076 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
14 Hb_000207_390 0.0682427716 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
15 Hb_143629_210 0.0713343307 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
16 Hb_003195_070 0.0727555653 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_000051_070 0.0737957276 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
18 Hb_000661_050 0.0743551876 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
19 Hb_000808_270 0.0753281578 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
20 Hb_123352_020 0.0754344249 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]

Gene co-expression network

sample Hb_001301_200 Hb_001301_200 Hb_007163_090 Hb_007163_090 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_001797_050 Hb_001797_050 Hb_007163_090--Hb_001797_050 Hb_023344_030--Hb_007163_090 Hb_007059_010 Hb_007059_010 Hb_023344_030--Hb_007059_010 Hb_004032_150 Hb_004032_150 Hb_023344_030--Hb_004032_150 Hb_000051_070 Hb_000051_070 Hb_023344_030--Hb_000051_070 Hb_005170_040 Hb_005170_040 Hb_023344_030--Hb_005170_040 Hb_002030_030 Hb_002030_030 Hb_004724_200--Hb_002030_030 Hb_002811_360 Hb_002811_360 Hb_004724_200--Hb_002811_360 Hb_004724_200--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_004724_200--Hb_004109_090 Hb_001199_020 Hb_001199_020 Hb_004724_200--Hb_001199_020 Hb_004447_060--Hb_001797_050 Hb_004619_050 Hb_004619_050 Hb_004447_060--Hb_004619_050 Hb_004447_060--Hb_048937_040 Hb_004447_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004447_060--Hb_000820_170 Hb_005993_020 Hb_005993_020 Hb_001680_010--Hb_005993_020 Hb_005532_050 Hb_005532_050 Hb_001680_010--Hb_005532_050 Hb_002131_020 Hb_002131_020 Hb_001680_010--Hb_002131_020 Hb_002835_370 Hb_002835_370 Hb_001680_010--Hb_002835_370 Hb_001541_020 Hb_001541_020 Hb_001680_010--Hb_001541_020 Hb_010457_030 Hb_010457_030 Hb_048937_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_000010_330 Hb_000010_330 Hb_048937_040--Hb_000010_330 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2998 9.64945 4.77616 8.67876 15.0659 19.9072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9658 10.2884 14.4793 7.68712 5.86872

CAGE analysis