Hb_000010_330

Information

Type -
Description -
Location Contig10: 371421-378838
Sequence    

Annotation

kegg
ID rcu:RCOM_1507680
description hypothetical protein
nr
ID XP_012079932.1
description PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
swissprot
ID Q9STL8
description Probable Ufm1-specific protease OS=Arabidopsis thaliana GN=At3g48380 PE=1 SV=2
trembl
ID A0A067K4D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11368 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00172: 371423-374373 , PASA_asmbl_00174: 375477-378701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_330 0.0 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
2 Hb_007904_200 0.0419693348 - - protein binding protein, putative [Ricinus communis]
3 Hb_010457_030 0.0422719108 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
4 Hb_019280_040 0.0446825958 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_003665_060 0.0509873829 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
6 Hb_002200_080 0.0528606894 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
7 Hb_048937_040 0.0580207301 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
8 Hb_000451_010 0.0596042379 - - secretory carrier membrane protein, putative [Ricinus communis]
9 Hb_003195_070 0.0609672969 - - Uncharacterized protein isoform 1 [Theobroma cacao]
10 Hb_000085_160 0.0614288348 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
11 Hb_003175_010 0.0622819239 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
12 Hb_005144_160 0.0623075317 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
13 Hb_007317_110 0.0632171839 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
14 Hb_002716_130 0.0632916217 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
15 Hb_002835_080 0.0640071956 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
16 Hb_000365_390 0.0643104532 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
17 Hb_001675_180 0.0660485741 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
18 Hb_008643_210 0.0671165635 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
19 Hb_003417_020 0.0673620633 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
20 Hb_007691_030 0.068082246 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]

Gene co-expression network

sample Hb_000010_330 Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_007904_200--Hb_010457_030 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_010457_030--Hb_048937_040 Hb_010457_030--Hb_019280_040 Hb_000365_390 Hb_000365_390 Hb_010457_030--Hb_000365_390 Hb_003175_010 Hb_003175_010 Hb_010457_030--Hb_003175_010 Hb_019280_040--Hb_003175_010 Hb_002835_080 Hb_002835_080 Hb_019280_040--Hb_002835_080 Hb_019280_040--Hb_002200_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020 Hb_003964_070 Hb_003964_070 Hb_003665_060--Hb_003964_070 Hb_007317_110 Hb_007317_110 Hb_003665_060--Hb_007317_110 Hb_000230_560 Hb_000230_560 Hb_003665_060--Hb_000230_560 Hb_003030_070 Hb_003030_070 Hb_003665_060--Hb_003030_070 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160 Hb_005144_160 Hb_005144_160 Hb_002200_080--Hb_005144_160 Hb_007691_030 Hb_007691_030 Hb_002200_080--Hb_007691_030 Hb_002200_080--Hb_003195_070 Hb_002200_080--Hb_000085_160 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4119 9.52373 9.5312 13.7623 17.7631 22.2012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3385 16.709 17.7146 10.1489 10.1289

CAGE analysis