Hb_007904_200

Information

Type -
Description -
Location Contig7904: 106251-112427
Sequence    

Annotation

kegg
ID rcu:RCOM_1083060
description protein binding protein, putative
nr
ID XP_002515041.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9SAF1
description Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1
trembl
ID B9RMS2
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1083060 PE=3 SV=1
Gene Ontology
ID GO:0005829
description actin-related protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58331: 106045-112557 , PASA_asmbl_58334: 111188-111480
cDNA
(Sanger)
(ID:Location)		 018_J19.ab1: 111663-112550 , 027_N18.ab1: 111843-112557 , 039_I07.ab1: 111701-112557 , 042_E13.ab1: 111727-112550

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_200 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000010_330 0.0419693348 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
3 Hb_010457_030 0.0541802457 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
4 Hb_000451_010 0.0572723387 - - secretory carrier membrane protein, putative [Ricinus communis]
5 Hb_000125_130 0.0600912524 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
6 Hb_003195_070 0.063423814 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_001047_030 0.0692602228 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
8 Hb_000365_390 0.0694045786 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
9 Hb_003665_060 0.0704995789 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
10 Hb_048937_040 0.0712573794 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
11 Hb_143629_210 0.0720329155 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
12 Hb_000618_040 0.0721776117 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
13 Hb_002506_020 0.0742676923 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
14 Hb_019280_040 0.0746275423 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000428_050 0.0751432603 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
16 Hb_003030_070 0.0764619813 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
17 Hb_002200_080 0.0765829355 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
18 Hb_082821_010 0.0774117141 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
19 Hb_008643_210 0.0774802536 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
20 Hb_010712_030 0.0787691742 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007904_200 Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_007904_200--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_007904_200--Hb_010457_030 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_010457_030--Hb_048937_040 Hb_010457_030--Hb_019280_040 Hb_000365_390 Hb_000365_390 Hb_010457_030--Hb_000365_390 Hb_003175_010 Hb_003175_010 Hb_010457_030--Hb_003175_010 Hb_000618_040 Hb_000618_040 Hb_000451_010--Hb_000618_040 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_004907_080 Hb_004907_080 Hb_000451_010--Hb_004907_080 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_008643_040 Hb_008643_040 Hb_000125_130--Hb_008643_040 Hb_010712_030 Hb_010712_030 Hb_000125_130--Hb_010712_030 Hb_000125_130--Hb_000365_390 Hb_000125_130--Hb_010457_030 Hb_002835_080 Hb_002835_080 Hb_000125_130--Hb_002835_080 Hb_002506_020 Hb_002506_020 Hb_003195_070--Hb_002506_020 Hb_003195_070--Hb_000010_330 Hb_003195_070--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_003195_070--Hb_004109_090 Hb_003195_070--Hb_002200_080 Hb_002400_470 Hb_002400_470 Hb_001047_030--Hb_002400_470 Hb_008864_110 Hb_008864_110 Hb_001047_030--Hb_008864_110 Hb_001301_200 Hb_001301_200 Hb_001047_030--Hb_001301_200 Hb_001047_030--Hb_048937_040 Hb_001047_030--Hb_010457_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.6895 15.0531 15.1618 24.0788 27.7218 35.5622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.105 23.9697 27.1173 11.3938 13.0204

CAGE analysis