Hb_010712_030

Information

Type -
Description -
Location Contig10712: 13436-17191
Sequence    

Annotation

kegg
ID rcu:RCOM_0621650
description hypothetical protein
nr
ID XP_002525567.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFJ8
description L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1
trembl
ID B9SHU8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0621650 PE=4 SV=1
Gene Ontology
ID GO:0010286
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02266: 13545-17012 , PASA_asmbl_02267: 15121-15293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010712_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004310_020 0.0490264214 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
3 Hb_000099_080 0.0614094818 - - kinesin light chain, putative [Ricinus communis]
4 Hb_000125_130 0.0645098675 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
5 Hb_000152_380 0.0698083682 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
6 Hb_001408_040 0.0707013071 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
7 Hb_007059_010 0.0709220776 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
8 Hb_001248_060 0.071878578 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000205_300 0.071960034 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
10 Hb_000580_180 0.0737482223 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001051_080 0.0763700267 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
12 Hb_004310_150 0.0772027122 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
13 Hb_000563_320 0.0785175509 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
14 Hb_007904_200 0.0787691742 - - protein binding protein, putative [Ricinus communis]
15 Hb_003549_150 0.0796005709 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
16 Hb_000796_210 0.0797528971 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000085_160 0.0798449774 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
18 Hb_158062_010 0.0800618124 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
19 Hb_007317_110 0.0803180458 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
20 Hb_143629_210 0.0803199799 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010712_030 Hb_010712_030 Hb_004310_020 Hb_004310_020 Hb_010712_030--Hb_004310_020 Hb_000099_080 Hb_000099_080 Hb_010712_030--Hb_000099_080 Hb_000125_130 Hb_000125_130 Hb_010712_030--Hb_000125_130 Hb_000152_380 Hb_000152_380 Hb_010712_030--Hb_000152_380 Hb_001408_040 Hb_001408_040 Hb_010712_030--Hb_001408_040 Hb_007059_010 Hb_007059_010 Hb_010712_030--Hb_007059_010 Hb_000205_300 Hb_000205_300 Hb_004310_020--Hb_000205_300 Hb_158062_010 Hb_158062_010 Hb_004310_020--Hb_158062_010 Hb_001135_130 Hb_001135_130 Hb_004310_020--Hb_001135_130 Hb_001051_080 Hb_001051_080 Hb_004310_020--Hb_001051_080 Hb_003549_150 Hb_003549_150 Hb_004310_020--Hb_003549_150 Hb_010128_080 Hb_010128_080 Hb_000099_080--Hb_010128_080 Hb_007691_030 Hb_007691_030 Hb_000099_080--Hb_007691_030 Hb_031527_040 Hb_031527_040 Hb_000099_080--Hb_031527_040 Hb_000395_190 Hb_000395_190 Hb_000099_080--Hb_000395_190 Hb_000563_320 Hb_000563_320 Hb_000099_080--Hb_000563_320 Hb_007904_200 Hb_007904_200 Hb_000125_130--Hb_007904_200 Hb_008643_040 Hb_008643_040 Hb_000125_130--Hb_008643_040 Hb_000365_390 Hb_000365_390 Hb_000125_130--Hb_000365_390 Hb_010457_030 Hb_010457_030 Hb_000125_130--Hb_010457_030 Hb_002835_080 Hb_002835_080 Hb_000125_130--Hb_002835_080 Hb_002518_280 Hb_002518_280 Hb_000152_380--Hb_002518_280 Hb_004310_150 Hb_004310_150 Hb_000152_380--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_000152_380--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_000152_380--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000152_380--Hb_001248_060 Hb_004221_020 Hb_004221_020 Hb_000152_380--Hb_004221_020 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_006827_020 Hb_006827_020 Hb_007059_010--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_007059_010--Hb_007317_110 Hb_002783_240 Hb_002783_240 Hb_007059_010--Hb_002783_240 Hb_000538_100 Hb_000538_100 Hb_007059_010--Hb_000538_100 Hb_103012_010 Hb_103012_010 Hb_007059_010--Hb_103012_010 Hb_009775_020 Hb_009775_020 Hb_007059_010--Hb_009775_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7132 10.3269 6.89318 11.3977 12.4959 13.9105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.077 12.5239 10.0207 7.17415 4.37107

CAGE analysis