Hb_004310_020

Information

Type -
Description -
Location Contig4310: 11900-18235
Sequence    

Annotation

kegg
ID tcc:TCM_005708
description Proteasome component (PCI) domain protein isoform 1
nr
ID XP_012083693.1
description PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
swissprot
ID Q94JU3
description COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1
trembl
ID A0A067JY12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14627 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cop9 signalosome complex subunit 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42234: 12237-17701 , PASA_asmbl_42235: 12226-17611 , PASA_asmbl_42236: 14923-17202 , PASA_asmbl_42237: 12226-12946 , PASA_asmbl_42238: 16880-17416 , PASA_asmbl_42239: 16484-16810
cDNA
(Sanger)
(ID:Location)		 051_J21.ab1: 13825-17701

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004310_020 0.0 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
2 Hb_010712_030 0.0490264214 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000205_300 0.0658075007 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
4 Hb_158062_010 0.0715592692 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
5 Hb_001135_130 0.0737253351 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
6 Hb_001051_080 0.0792227991 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
7 Hb_003549_150 0.0808884152 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
8 Hb_002235_210 0.0811480224 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
9 Hb_000060_040 0.0815945334 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
10 Hb_000125_130 0.0832702169 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
11 Hb_003528_010 0.0850989335 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
12 Hb_000085_180 0.0883366201 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
13 Hb_001408_040 0.089298185 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
14 Hb_000146_050 0.0895533232 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
15 Hb_004586_140 0.0895615992 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
16 Hb_032920_060 0.0901722437 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
17 Hb_000603_150 0.0907182027 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
18 Hb_007059_010 0.0907836448 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
19 Hb_000982_060 0.0924939639 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
20 Hb_004631_180 0.0928080823 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_004310_020 Hb_004310_020 Hb_010712_030 Hb_010712_030 Hb_004310_020--Hb_010712_030 Hb_000205_300 Hb_000205_300 Hb_004310_020--Hb_000205_300 Hb_158062_010 Hb_158062_010 Hb_004310_020--Hb_158062_010 Hb_001135_130 Hb_001135_130 Hb_004310_020--Hb_001135_130 Hb_001051_080 Hb_001051_080 Hb_004310_020--Hb_001051_080 Hb_003549_150 Hb_003549_150 Hb_004310_020--Hb_003549_150 Hb_000099_080 Hb_000099_080 Hb_010712_030--Hb_000099_080 Hb_000125_130 Hb_000125_130 Hb_010712_030--Hb_000125_130 Hb_000152_380 Hb_000152_380 Hb_010712_030--Hb_000152_380 Hb_001408_040 Hb_001408_040 Hb_010712_030--Hb_001408_040 Hb_007059_010 Hb_007059_010 Hb_010712_030--Hb_007059_010 Hb_000603_150 Hb_000603_150 Hb_000205_300--Hb_000603_150 Hb_000205_300--Hb_158062_010 Hb_000120_670 Hb_000120_670 Hb_000205_300--Hb_000120_670 Hb_003693_070 Hb_003693_070 Hb_000205_300--Hb_003693_070 Hb_000205_300--Hb_010712_030 Hb_158062_010--Hb_007059_010 Hb_000146_050 Hb_000146_050 Hb_158062_010--Hb_000146_050 Hb_003964_070 Hb_003964_070 Hb_158062_010--Hb_003964_070 Hb_158062_010--Hb_003549_150 Hb_000982_060 Hb_000982_060 Hb_001135_130--Hb_000982_060 Hb_000442_150 Hb_000442_150 Hb_001135_130--Hb_000442_150 Hb_001135_130--Hb_000205_300 Hb_002235_210 Hb_002235_210 Hb_001135_130--Hb_002235_210 Hb_057878_010 Hb_057878_010 Hb_001135_130--Hb_057878_010 Hb_004631_180 Hb_004631_180 Hb_001051_080--Hb_004631_180 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_000120_430 Hb_000120_430 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_001051_080--Hb_003549_150 Hb_003549_150--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003549_150--Hb_010381_090 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_003549_150--Hb_001408_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7444 12.7259 9.60408 16.9244 14.6278 18.0523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9429 15.1389 12.2519 9.2423 3.51276

CAGE analysis