Hb_000146_050

Information

Type -
Description -
Location Contig146: 93493-101191
Sequence    

Annotation

kegg
ID tcc:TCM_007139
description UNC-50 family protein isoform 1
nr
ID XP_012436152.1
description PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
swissprot
ID Q54DD7
description Protein unc-50 homolog OS=Dictyostelium discoideum GN=DDB_G0292320 PE=3 SV=1
trembl
ID A0A0D2PML8
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G022900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11861: 93552-101155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000146_050 0.0 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
2 Hb_090051_030 0.0643143031 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
3 Hb_012322_020 0.0644198327 - - -
4 Hb_001633_130 0.065903365 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
5 Hb_158062_010 0.069376797 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
6 Hb_000603_150 0.0734777097 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
7 Hb_000205_300 0.0768380689 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
8 Hb_001018_130 0.0773904102 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
9 Hb_082821_010 0.0799329043 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
10 Hb_007059_010 0.0799700253 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
11 Hb_005144_160 0.0822363734 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
12 Hb_007904_200 0.0823349947 - - protein binding protein, putative [Ricinus communis]
13 Hb_002445_120 0.0840589127 - - secretory carrier membrane protein, putative [Ricinus communis]
14 Hb_000260_330 0.0841138444 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
15 Hb_033642_030 0.0845725364 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
16 Hb_030736_020 0.0858306217 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010712_030 0.0864422445 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005023_010 0.0865365401 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
19 Hb_000120_670 0.0868535598 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
20 Hb_000808_280 0.0872718346 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000146_050 Hb_000146_050 Hb_090051_030 Hb_090051_030 Hb_000146_050--Hb_090051_030 Hb_012322_020 Hb_012322_020 Hb_000146_050--Hb_012322_020 Hb_001633_130 Hb_001633_130 Hb_000146_050--Hb_001633_130 Hb_158062_010 Hb_158062_010 Hb_000146_050--Hb_158062_010 Hb_000603_150 Hb_000603_150 Hb_000146_050--Hb_000603_150 Hb_000205_300 Hb_000205_300 Hb_000146_050--Hb_000205_300 Hb_082821_010 Hb_082821_010 Hb_090051_030--Hb_082821_010 Hb_090051_030--Hb_001633_130 Hb_005023_010 Hb_005023_010 Hb_090051_030--Hb_005023_010 Hb_033642_030 Hb_033642_030 Hb_090051_030--Hb_033642_030 Hb_006455_120 Hb_006455_120 Hb_090051_030--Hb_006455_120 Hb_000009_400 Hb_000009_400 Hb_012322_020--Hb_000009_400 Hb_001051_080 Hb_001051_080 Hb_012322_020--Hb_001051_080 Hb_001635_160 Hb_001635_160 Hb_012322_020--Hb_001635_160 Hb_172632_120 Hb_172632_120 Hb_012322_020--Hb_172632_120 Hb_002235_210 Hb_002235_210 Hb_012322_020--Hb_002235_210 Hb_001633_130--Hb_082821_010 Hb_001633_130--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_001633_130--Hb_001159_130 Hb_003177_030 Hb_003177_030 Hb_001633_130--Hb_003177_030 Hb_158062_010--Hb_000205_300 Hb_007059_010 Hb_007059_010 Hb_158062_010--Hb_007059_010 Hb_004310_020 Hb_004310_020 Hb_158062_010--Hb_004310_020 Hb_003964_070 Hb_003964_070 Hb_158062_010--Hb_003964_070 Hb_003549_150 Hb_003549_150 Hb_158062_010--Hb_003549_150 Hb_000603_150--Hb_006455_120 Hb_000603_150--Hb_001159_130 Hb_000603_150--Hb_000205_300 Hb_000120_670 Hb_000120_670 Hb_000603_150--Hb_000120_670 Hb_000580_180 Hb_000580_180 Hb_000603_150--Hb_000580_180 Hb_000603_150--Hb_003549_150 Hb_000205_300--Hb_004310_020 Hb_000205_300--Hb_000120_670 Hb_003693_070 Hb_003693_070 Hb_000205_300--Hb_003693_070 Hb_010712_030 Hb_010712_030 Hb_000205_300--Hb_010712_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0447 7.85138 8.60333 19.1518 14.513 15.579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9709 11.1424 11.7757 8.00886 6.42876

CAGE analysis