Hb_000009_400

Information

Type -
Description -
Location Contig9: 393021-399284
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12160g
description POPTRDRAFT_1083368; hypothetical protein
nr
ID XP_012079112.1
description PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
swissprot
ID Q9SVM0
description BTB/POZ domain-containing protein At3g50780 OS=Arabidopsis thaliana GN=At3g50780 PE=2 SV=1
trembl
ID A0A067KHU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12286 PE=4 SV=1
Gene Ontology
ID GO:0008233
description btb poz domain-containing protein at3g50780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61882: 393604-399159 , PASA_asmbl_61884: 395928-396061 , PASA_asmbl_61885: 397829-397970 , PASA_asmbl_61886: 399301-399413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_400 0.0 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
2 Hb_005276_060 0.0641816558 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
3 Hb_000046_570 0.0663798263 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
4 Hb_000322_070 0.0679434822 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
5 Hb_003929_170 0.0708545902 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
6 Hb_005797_010 0.0712737771 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
7 Hb_012322_020 0.0721484229 - - -
8 Hb_004109_230 0.0769708993 - - heat shock protein binding protein, putative [Ricinus communis]
9 Hb_002728_080 0.077158245 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_002876_320 0.0771609188 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
11 Hb_000120_170 0.079813198 - - selenoprotein [Populus trichocarpa]
12 Hb_001016_050 0.0799194428 - - drought-inducible protein [Manihot esculenta]
13 Hb_005460_050 0.0808089433 - - COR413-PM2, putative [Ricinus communis]
14 Hb_000390_250 0.081070236 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
15 Hb_000139_530 0.0836247002 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000329_230 0.0837807847 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
17 Hb_000096_120 0.0841158054 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
18 Hb_000022_050 0.0844698494 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
19 Hb_000146_040 0.0849115068 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
20 Hb_012395_170 0.0853144441 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000009_400 Hb_000009_400 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_003929_170 Hb_003929_170 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020 Hb_012395_170 Hb_012395_170 Hb_005276_060--Hb_012395_170 Hb_084247_010 Hb_084247_010 Hb_005276_060--Hb_084247_010 Hb_001016_050 Hb_001016_050 Hb_005276_060--Hb_001016_050 Hb_003617_020 Hb_003617_020 Hb_005276_060--Hb_003617_020 Hb_005276_060--Hb_003929_170 Hb_007062_040 Hb_007062_040 Hb_000046_570--Hb_007062_040 Hb_004586_060 Hb_004586_060 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_001405_210 Hb_001405_210 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_000322_070--Hb_000046_570 Hb_162060_010 Hb_162060_010 Hb_000322_070--Hb_162060_010 Hb_000322_070--Hb_003617_020 Hb_008253_020 Hb_008253_020 Hb_000322_070--Hb_008253_020 Hb_000322_070--Hb_000390_250 Hb_001087_030 Hb_001087_030 Hb_003929_170--Hb_001087_030 Hb_003929_170--Hb_000046_570 Hb_000207_150 Hb_000207_150 Hb_003929_170--Hb_000207_150 Hb_003929_170--Hb_000390_250 Hb_000107_230 Hb_000107_230 Hb_003929_170--Hb_000107_230 Hb_007481_010 Hb_007481_010 Hb_005797_010--Hb_007481_010 Hb_002728_080 Hb_002728_080 Hb_005797_010--Hb_002728_080 Hb_000139_530 Hb_000139_530 Hb_005797_010--Hb_000139_530 Hb_004102_170 Hb_004102_170 Hb_005797_010--Hb_004102_170 Hb_023313_030 Hb_023313_030 Hb_005797_010--Hb_023313_030 Hb_000146_050 Hb_000146_050 Hb_012322_020--Hb_000146_050 Hb_001051_080 Hb_001051_080 Hb_012322_020--Hb_001051_080 Hb_001635_160 Hb_001635_160 Hb_012322_020--Hb_001635_160 Hb_172632_120 Hb_172632_120 Hb_012322_020--Hb_172632_120 Hb_002235_210 Hb_002235_210 Hb_012322_020--Hb_002235_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7798 26.0538 23.1642 44.319 23.6615 24.3012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2147 17.3685 18.4864 17.5324 16.5096

CAGE analysis