Hb_001016_050

Information

Type -
Description -
Location Contig1016: 83634-85041
Sequence    

Annotation

kegg
ID rcu:RCOM_0572770
description hypothetical protein
nr
ID AGC51775.1
description drought-inducible protein [Manihot esculenta]
swissprot
ID -
description -
trembl
ID V9M4U9
description Drought-inducible protein OS=Manihot esculenta GN=ERD7 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00752: 61305-85021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_050 0.0 - - drought-inducible protein [Manihot esculenta]
2 Hb_006658_020 0.0611039243 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
3 Hb_005276_060 0.0652140396 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
4 Hb_000009_400 0.0799194428 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
5 Hb_004109_230 0.0803383409 - - heat shock protein binding protein, putative [Ricinus communis]
6 Hb_008253_020 0.0837729125 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
7 Hb_007810_110 0.0859274875 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
8 Hb_000046_570 0.0877787793 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
9 Hb_004128_130 0.0891403675 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
10 Hb_002495_080 0.0894916646 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
11 Hb_012395_170 0.0905874303 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000049_020 0.0936673355 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
13 Hb_000322_070 0.0940227428 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
14 Hb_000071_120 0.0941528296 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
15 Hb_001109_060 0.0947240347 - - amino acid transporter, putative [Ricinus communis]
16 Hb_000061_240 0.09611458 - - kinase, putative [Ricinus communis]
17 Hb_000258_070 0.0964589474 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
18 Hb_000313_220 0.0978364442 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
19 Hb_000635_040 0.0978656596 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
20 Hb_000390_250 0.0983625972 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001016_050 Hb_001016_050 Hb_006658_020 Hb_006658_020 Hb_001016_050--Hb_006658_020 Hb_005276_060 Hb_005276_060 Hb_001016_050--Hb_005276_060 Hb_000009_400 Hb_000009_400 Hb_001016_050--Hb_000009_400 Hb_004109_230 Hb_004109_230 Hb_001016_050--Hb_004109_230 Hb_008253_020 Hb_008253_020 Hb_001016_050--Hb_008253_020 Hb_007810_110 Hb_007810_110 Hb_001016_050--Hb_007810_110 Hb_004452_110 Hb_004452_110 Hb_006658_020--Hb_004452_110 Hb_002046_160 Hb_002046_160 Hb_006658_020--Hb_002046_160 Hb_000258_070 Hb_000258_070 Hb_006658_020--Hb_000258_070 Hb_002495_080 Hb_002495_080 Hb_006658_020--Hb_002495_080 Hb_132840_110 Hb_132840_110 Hb_006658_020--Hb_132840_110 Hb_012395_170 Hb_012395_170 Hb_005276_060--Hb_012395_170 Hb_084247_010 Hb_084247_010 Hb_005276_060--Hb_084247_010 Hb_005276_060--Hb_000009_400 Hb_003617_020 Hb_003617_020 Hb_005276_060--Hb_003617_020 Hb_003929_170 Hb_003929_170 Hb_005276_060--Hb_003929_170 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020 Hb_000009_500 Hb_000009_500 Hb_004109_230--Hb_000009_500 Hb_000139_130 Hb_000139_130 Hb_004109_230--Hb_000139_130 Hb_028512_020 Hb_028512_020 Hb_004109_230--Hb_028512_020 Hb_003943_010 Hb_003943_010 Hb_004109_230--Hb_003943_010 Hb_014361_070 Hb_014361_070 Hb_004109_230--Hb_014361_070 Hb_011849_040 Hb_011849_040 Hb_004109_230--Hb_011849_040 Hb_004129_070 Hb_004129_070 Hb_008253_020--Hb_004129_070 Hb_000402_230 Hb_000402_230 Hb_008253_020--Hb_000402_230 Hb_008253_020--Hb_007810_110 Hb_002276_240 Hb_002276_240 Hb_008253_020--Hb_002276_240 Hb_001089_050 Hb_001089_050 Hb_008253_020--Hb_001089_050 Hb_008253_020--Hb_000009_500 Hb_031042_050 Hb_031042_050 Hb_007810_110--Hb_031042_050 Hb_007810_110--Hb_004129_070 Hb_001279_120 Hb_001279_120 Hb_007810_110--Hb_001279_120 Hb_007810_110--Hb_002276_240 Hb_159558_010 Hb_159558_010 Hb_007810_110--Hb_159558_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8156 15.7472 10.1518 22.0674 13.0011 11.2491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.86112 9.03399 8.78927 8.41136 13.8258

CAGE analysis