Hb_008253_020

Information

Type -
Description -
Location Contig8253: 20703-36808
Sequence    

Annotation

kegg
ID cic:CICLE_v10014898mg
description hypothetical protein
nr
ID XP_012071218.1
description PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
swissprot
ID Q9LU89
description Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1
trembl
ID A0A067LPA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10184 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 57 kda regulatory subunit b theta isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59706: 21441-36972 , PASA_asmbl_59709: 36223-36431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008253_020 0.0 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
2 Hb_004129_070 0.0487806914 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
3 Hb_000402_230 0.0526331699 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
4 Hb_007810_110 0.0609834097 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
5 Hb_002276_240 0.0638376638 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
6 Hb_001089_050 0.0649245787 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
7 Hb_000009_500 0.065436073 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
8 Hb_001033_050 0.0664121427 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
9 Hb_003866_080 0.0683772558 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
10 Hb_031042_050 0.0689098013 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
11 Hb_004109_230 0.0698335666 - - heat shock protein binding protein, putative [Ricinus communis]
12 Hb_008937_010 0.0698587549 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
13 Hb_000069_130 0.0702107613 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
14 Hb_000139_130 0.070810204 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
15 Hb_004143_100 0.0709131556 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010712_090 0.0716292921 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
17 Hb_001135_120 0.0725890794 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
18 Hb_008253_030 0.0725958533 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
19 Hb_001489_100 0.0736606763 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
20 Hb_001545_150 0.0743101893 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]

Gene co-expression network

sample Hb_008253_020 Hb_008253_020 Hb_004129_070 Hb_004129_070 Hb_008253_020--Hb_004129_070 Hb_000402_230 Hb_000402_230 Hb_008253_020--Hb_000402_230 Hb_007810_110 Hb_007810_110 Hb_008253_020--Hb_007810_110 Hb_002276_240 Hb_002276_240 Hb_008253_020--Hb_002276_240 Hb_001089_050 Hb_001089_050 Hb_008253_020--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_008253_020--Hb_000009_500 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_004129_070--Hb_002276_240 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_001033_050 Hb_001033_050 Hb_004129_070--Hb_001033_050 Hb_001135_120 Hb_001135_120 Hb_004129_070--Hb_001135_120 Hb_004143_100 Hb_004143_100 Hb_000402_230--Hb_004143_100 Hb_000402_230--Hb_001089_050 Hb_000402_230--Hb_000009_500 Hb_003866_080 Hb_003866_080 Hb_000402_230--Hb_003866_080 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_031042_050 Hb_031042_050 Hb_007810_110--Hb_031042_050 Hb_007810_110--Hb_004129_070 Hb_001279_120 Hb_001279_120 Hb_007810_110--Hb_001279_120 Hb_007810_110--Hb_002276_240 Hb_159558_010 Hb_159558_010 Hb_007810_110--Hb_159558_010 Hb_009083_070 Hb_009083_070 Hb_002276_240--Hb_009083_070 Hb_002267_140 Hb_002267_140 Hb_002276_240--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_002276_240--Hb_001147_110 Hb_001767_140 Hb_001767_140 Hb_002276_240--Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_002276_240--Hb_008253_030 Hb_001089_050--Hb_003866_080 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_001089_050--Hb_004143_100 Hb_001716_020 Hb_001716_020 Hb_001089_050--Hb_001716_020 Hb_000009_500--Hb_011849_040 Hb_079326_020 Hb_079326_020 Hb_000009_500--Hb_079326_020 Hb_002026_210 Hb_002026_210 Hb_000009_500--Hb_002026_210 Hb_004109_230 Hb_004109_230 Hb_000009_500--Hb_004109_230 Hb_000614_210 Hb_000614_210 Hb_000009_500--Hb_000614_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.18262 13.683 6.97389 11.1327 8.86866 8.29346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8408 5.30956 5.65682 6.63727 6.81782

CAGE analysis