Hb_009083_070

Information

Type -
Description -
Location Contig9083: 33715-37985
Sequence    

Annotation

kegg
ID vvi:104878419
description uncharacterized LOC104878419
nr
ID XP_012079438.1
description PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12561 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62102: 33592-37871 , PASA_asmbl_62103: 36307-36470
cDNA
(Sanger)
(ID:Location)		 053_D07.ab1: 35672-37868

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009083_070 0.0 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
2 Hb_002276_240 0.0512841235 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
3 Hb_184798_080 0.0610240326 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
4 Hb_004129_070 0.0613477885 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
5 Hb_001135_120 0.0629960435 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
6 Hb_002046_110 0.0659400237 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
7 Hb_005918_010 0.0710633036 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
8 Hb_145880_010 0.0715763025 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
9 Hb_000739_180 0.071705903 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
10 Hb_142218_020 0.0733237052 - - actin family protein [Populus trichocarpa]
11 Hb_008253_020 0.0756901266 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
12 Hb_006615_120 0.0791191142 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
13 Hb_000120_910 0.0799557013 - - plant ubiquilin, putative [Ricinus communis]
14 Hb_005306_160 0.0812462553 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
15 Hb_008160_030 0.0816442459 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000174_060 0.0818190798 - - zinc finger family protein [Populus trichocarpa]
17 Hb_001147_110 0.0819118333 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
18 Hb_000402_230 0.0826671916 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
19 Hb_001489_100 0.0831020308 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
20 Hb_003640_040 0.0832251487 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]

Gene co-expression network

sample Hb_009083_070 Hb_009083_070 Hb_002276_240 Hb_002276_240 Hb_009083_070--Hb_002276_240 Hb_184798_080 Hb_184798_080 Hb_009083_070--Hb_184798_080 Hb_004129_070 Hb_004129_070 Hb_009083_070--Hb_004129_070 Hb_001135_120 Hb_001135_120 Hb_009083_070--Hb_001135_120 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_002276_240--Hb_004129_070 Hb_002267_140 Hb_002267_140 Hb_002276_240--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_002276_240--Hb_001147_110 Hb_001767_140 Hb_001767_140 Hb_002276_240--Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_002276_240--Hb_008253_030 Hb_184798_080--Hb_001147_110 Hb_002325_040 Hb_002325_040 Hb_184798_080--Hb_002325_040 Hb_184798_080--Hb_004129_070 Hb_184798_080--Hb_002276_240 Hb_184798_080--Hb_001135_120 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_001033_050 Hb_001033_050 Hb_004129_070--Hb_001033_050 Hb_004129_070--Hb_001135_120 Hb_001135_120--Hb_002325_040 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_001135_120--Hb_001033_050 Hb_002046_110--Hb_002325_040 Hb_005306_160 Hb_005306_160 Hb_002046_110--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_002046_110--Hb_000928_220 Hb_002046_110--Hb_001135_120 Hb_000076_160 Hb_000076_160 Hb_002046_110--Hb_000076_160 Hb_005137_040 Hb_005137_040 Hb_005918_010--Hb_005137_040 Hb_012506_030 Hb_012506_030 Hb_005918_010--Hb_012506_030 Hb_003544_060 Hb_003544_060 Hb_005918_010--Hb_003544_060 Hb_001153_190 Hb_001153_190 Hb_005918_010--Hb_001153_190 Hb_105105_010 Hb_105105_010 Hb_005918_010--Hb_105105_010 Hb_000441_220 Hb_000441_220 Hb_005918_010--Hb_000441_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.2434 44.9317 33.6713 39.866 31.9723 28.3987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1757 18.334 29.1472 33.0837 19.2569

CAGE analysis