Hb_001153_190

Information

Type -
Description -
Location Contig1153: 139513-150726
Sequence    

Annotation

kegg
ID rcu:RCOM_1683300
description DNA-directed RNA polymerase, putative
nr
ID XP_012087018.1
description PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
swissprot
ID Q9LQ02
description DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana GN=NRPD1 PE=1 SV=1
trembl
ID B9RC12
description DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_1683300 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase iv subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04623: 142204-142670 , PASA_asmbl_04624: 142678-143038 , PASA_asmbl_04625: 143309-143758 , PASA_asmbl_04626: 145419-146473 , PASA_asmbl_04627: 146657-146830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_190 0.0 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
2 Hb_005918_010 0.0622506055 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
3 Hb_005000_190 0.0732777402 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
4 Hb_002805_190 0.0755149307 - - spliceosome associated protein, putative [Ricinus communis]
5 Hb_001981_030 0.0765611392 - - nuclear acid binding protein, putative [Ricinus communis]
6 Hb_000162_030 0.0785449656 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
7 Hb_002046_110 0.0816145732 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
8 Hb_003861_050 0.082690966 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
9 Hb_000462_060 0.083880335 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
10 Hb_001488_200 0.0851909661 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
11 Hb_010407_050 0.0856593859 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
12 Hb_000086_500 0.0859268197 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_000441_220 0.086132833 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_012506_030 0.0867141522 - - AP-2 complex subunit alpha, putative [Ricinus communis]
15 Hb_008062_050 0.0867213379 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
16 Hb_005137_040 0.0879011362 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
17 Hb_001635_040 0.0879027851 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
18 Hb_002684_040 0.0890832096 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
19 Hb_000109_210 0.0908883981 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
20 Hb_002889_010 0.0921472208 - - ubx domain-containing, putative [Ricinus communis]

Gene co-expression network

sample Hb_001153_190 Hb_001153_190 Hb_005918_010 Hb_005918_010 Hb_001153_190--Hb_005918_010 Hb_005000_190 Hb_005000_190 Hb_001153_190--Hb_005000_190 Hb_002805_190 Hb_002805_190 Hb_001153_190--Hb_002805_190 Hb_001981_030 Hb_001981_030 Hb_001153_190--Hb_001981_030 Hb_000162_030 Hb_000162_030 Hb_001153_190--Hb_000162_030 Hb_002046_110 Hb_002046_110 Hb_001153_190--Hb_002046_110 Hb_005137_040 Hb_005137_040 Hb_005918_010--Hb_005137_040 Hb_012506_030 Hb_012506_030 Hb_005918_010--Hb_012506_030 Hb_003544_060 Hb_003544_060 Hb_005918_010--Hb_003544_060 Hb_105105_010 Hb_105105_010 Hb_005918_010--Hb_105105_010 Hb_000441_220 Hb_000441_220 Hb_005918_010--Hb_000441_220 Hb_001158_070 Hb_001158_070 Hb_005000_190--Hb_001158_070 Hb_005000_190--Hb_001981_030 Hb_002843_120 Hb_002843_120 Hb_005000_190--Hb_002843_120 Hb_000603_280 Hb_000603_280 Hb_005000_190--Hb_000603_280 Hb_032202_140 Hb_032202_140 Hb_005000_190--Hb_032202_140 Hb_000398_080 Hb_000398_080 Hb_002805_190--Hb_000398_080 Hb_003861_050 Hb_003861_050 Hb_002805_190--Hb_003861_050 Hb_005289_040 Hb_005289_040 Hb_002805_190--Hb_005289_040 Hb_003638_090 Hb_003638_090 Hb_002805_190--Hb_003638_090 Hb_008568_020 Hb_008568_020 Hb_002805_190--Hb_008568_020 Hb_001377_310 Hb_001377_310 Hb_002805_190--Hb_001377_310 Hb_002686_170 Hb_002686_170 Hb_001981_030--Hb_002686_170 Hb_000185_070 Hb_000185_070 Hb_001981_030--Hb_000185_070 Hb_002197_020 Hb_002197_020 Hb_001981_030--Hb_002197_020 Hb_000915_180 Hb_000915_180 Hb_001981_030--Hb_000915_180 Hb_001635_040 Hb_001635_040 Hb_000162_030--Hb_001635_040 Hb_001147_110 Hb_001147_110 Hb_000162_030--Hb_001147_110 Hb_001268_280 Hb_001268_280 Hb_000162_030--Hb_001268_280 Hb_000162_030--Hb_008568_020 Hb_004357_020 Hb_004357_020 Hb_000162_030--Hb_004357_020 Hb_002276_240 Hb_002276_240 Hb_000162_030--Hb_002276_240 Hb_009083_070 Hb_009083_070 Hb_002046_110--Hb_009083_070 Hb_002325_040 Hb_002325_040 Hb_002046_110--Hb_002325_040 Hb_005306_160 Hb_005306_160 Hb_002046_110--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_002046_110--Hb_000928_220 Hb_001135_120 Hb_001135_120 Hb_002046_110--Hb_001135_120 Hb_000076_160 Hb_000076_160 Hb_002046_110--Hb_000076_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.8732 3.66043 4.67912 2.80719 3.0764 3.75264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86702 1.67054 3.35332 4.14209 2.31364

CAGE analysis