Hb_001158_070

Information

Type -
Description -
Location Contig1158: 34873-45486
Sequence    

Annotation

kegg
ID rcu:RCOM_1505100
description Protein DEK, putative
nr
ID XP_002511137.1
description Protein DEK, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAB2
description Protein DEK, putative OS=Ricinus communis GN=RCOM_1505100 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein dek

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04741: 40607-41408 , PASA_asmbl_04742: 41510-43454 , PASA_asmbl_04743: 45029-45256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_070 0.0 - - Protein DEK, putative [Ricinus communis]
2 Hb_000205_190 0.055679294 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_005000_190 0.0617262267 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
4 Hb_008165_060 0.0624426599 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
5 Hb_000010_400 0.0789689133 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
6 Hb_000603_280 0.0806945157 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
7 Hb_002843_120 0.0847876958 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
8 Hb_011995_010 0.0858569767 - - dc50, putative [Ricinus communis]
9 Hb_000917_060 0.0860000284 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
10 Hb_001981_030 0.0864864116 - - nuclear acid binding protein, putative [Ricinus communis]
11 Hb_001728_050 0.0878203832 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
12 Hb_008406_200 0.0879960429 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
13 Hb_000185_070 0.0897226773 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007007_120 0.0898280228 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
15 Hb_002876_230 0.0902820901 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
16 Hb_000289_060 0.0915920029 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
17 Hb_007075_040 0.0927519562 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
18 Hb_000575_040 0.0931249617 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
19 Hb_023344_120 0.0936196268 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
20 Hb_000329_320 0.0955632188 - - PREDICTED: DNA ligase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001158_070 Hb_001158_070 Hb_000205_190 Hb_000205_190 Hb_001158_070--Hb_000205_190 Hb_005000_190 Hb_005000_190 Hb_001158_070--Hb_005000_190 Hb_008165_060 Hb_008165_060 Hb_001158_070--Hb_008165_060 Hb_000010_400 Hb_000010_400 Hb_001158_070--Hb_000010_400 Hb_000603_280 Hb_000603_280 Hb_001158_070--Hb_000603_280 Hb_002843_120 Hb_002843_120 Hb_001158_070--Hb_002843_120 Hb_004970_190 Hb_004970_190 Hb_000205_190--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_000205_190--Hb_000804_040 Hb_000205_190--Hb_008165_060 Hb_001001_080 Hb_001001_080 Hb_000205_190--Hb_001001_080 Hb_007007_120 Hb_007007_120 Hb_000205_190--Hb_007007_120 Hb_001981_030 Hb_001981_030 Hb_005000_190--Hb_001981_030 Hb_005000_190--Hb_002843_120 Hb_005000_190--Hb_000603_280 Hb_001153_190 Hb_001153_190 Hb_005000_190--Hb_001153_190 Hb_032202_140 Hb_032202_140 Hb_005000_190--Hb_032202_140 Hb_000329_320 Hb_000329_320 Hb_008165_060--Hb_000329_320 Hb_001700_010 Hb_001700_010 Hb_008165_060--Hb_001700_010 Hb_000917_060 Hb_000917_060 Hb_008165_060--Hb_000917_060 Hb_005269_070 Hb_005269_070 Hb_008165_060--Hb_005269_070 Hb_011995_010 Hb_011995_010 Hb_000010_400--Hb_011995_010 Hb_007813_040 Hb_007813_040 Hb_000010_400--Hb_007813_040 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_000302_270 Hb_000302_270 Hb_000010_400--Hb_000302_270 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000521_320 Hb_000521_320 Hb_000010_400--Hb_000521_320 Hb_000603_280--Hb_002843_120 Hb_000077_140 Hb_000077_140 Hb_000603_280--Hb_000077_140 Hb_007163_120 Hb_007163_120 Hb_000603_280--Hb_007163_120 Hb_005653_090 Hb_005653_090 Hb_000603_280--Hb_005653_090 Hb_008406_200 Hb_008406_200 Hb_000603_280--Hb_008406_200 Hb_013399_100 Hb_013399_100 Hb_000603_280--Hb_013399_100 Hb_002267_140 Hb_002267_140 Hb_002843_120--Hb_002267_140 Hb_138596_010 Hb_138596_010 Hb_002843_120--Hb_138596_010 Hb_002843_120--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_002843_120--Hb_003504_030 Hb_002843_120--Hb_013399_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.8784 18.7229 24.6206 13.1372 15.7881 22.3088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1224 16.9018 27.1067 16.8519 17.9713

CAGE analysis