Hb_032202_140

Information

Type -
Description -
Location Contig32202: 91788-95522
Sequence    

Annotation

kegg
ID rcu:RCOM_1613690
description DNA binding protein, putative
nr
ID XP_012083493.1
description PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
swissprot
ID Q9LPD2
description Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2 SV=3
trembl
ID A0A067JXU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14468 PE=4 SV=1
Gene Ontology
ID GO:0003677
description flap endonuclease gen-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34087: 92358-95520 , PASA_asmbl_34088: 91938-93325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_140 0.0 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
2 Hb_002600_020 0.0443292594 - - unnamed protein product [Vitis vinifera]
3 Hb_002013_020 0.0645547509 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
4 Hb_001163_050 0.0668931663 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
5 Hb_003001_080 0.0669272874 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
6 Hb_001456_060 0.0671200873 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
7 Hb_011995_010 0.0679990422 - - dc50, putative [Ricinus communis]
8 Hb_000917_060 0.0680766417 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
9 Hb_001408_140 0.0706893881 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
10 Hb_000331_550 0.0748812056 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
11 Hb_005000_190 0.0763916375 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
12 Hb_011519_010 0.0782226646 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
13 Hb_000915_180 0.0800467281 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
14 Hb_000866_410 0.0803116284 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
15 Hb_021419_030 0.0804015037 - - hypothetical protein glysoja_023295 [Glycine soja]
16 Hb_002876_230 0.0806503135 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
17 Hb_004052_080 0.0810315196 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000010_400 0.0814991201 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
19 Hb_010381_090 0.0819053454 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
20 Hb_013358_040 0.0820369065 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_032202_140 Hb_032202_140 Hb_002600_020 Hb_002600_020 Hb_032202_140--Hb_002600_020 Hb_002013_020 Hb_002013_020 Hb_032202_140--Hb_002013_020 Hb_001163_050 Hb_001163_050 Hb_032202_140--Hb_001163_050 Hb_003001_080 Hb_003001_080 Hb_032202_140--Hb_003001_080 Hb_001456_060 Hb_001456_060 Hb_032202_140--Hb_001456_060 Hb_011995_010 Hb_011995_010 Hb_032202_140--Hb_011995_010 Hb_000181_110 Hb_000181_110 Hb_002600_020--Hb_000181_110 Hb_002530_030 Hb_002530_030 Hb_002600_020--Hb_002530_030 Hb_002600_020--Hb_001163_050 Hb_000684_380 Hb_000684_380 Hb_002600_020--Hb_000684_380 Hb_153553_030 Hb_153553_030 Hb_002600_020--Hb_153553_030 Hb_004052_080 Hb_004052_080 Hb_002013_020--Hb_004052_080 Hb_003513_010 Hb_003513_010 Hb_002013_020--Hb_003513_010 Hb_002013_020--Hb_001456_060 Hb_002013_020--Hb_001163_050 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_001163_050--Hb_003001_080 Hb_008453_140 Hb_008453_140 Hb_001163_050--Hb_008453_140 Hb_000340_400 Hb_000340_400 Hb_003001_080--Hb_000340_400 Hb_152175_010 Hb_152175_010 Hb_003001_080--Hb_152175_010 Hb_003001_080--Hb_008453_140 Hb_004837_180 Hb_004837_180 Hb_003001_080--Hb_004837_180 Hb_009911_030 Hb_009911_030 Hb_001456_060--Hb_009911_030 Hb_000339_040 Hb_000339_040 Hb_001456_060--Hb_000339_040 Hb_004994_010 Hb_004994_010 Hb_001456_060--Hb_004994_010 Hb_001456_060--Hb_004052_080 Hb_001456_060--Hb_002876_230 Hb_005867_070 Hb_005867_070 Hb_001456_060--Hb_005867_070 Hb_000010_400 Hb_000010_400 Hb_011995_010--Hb_000010_400 Hb_001248_060 Hb_001248_060 Hb_011995_010--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_011995_010--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020 Hb_000563_320 Hb_000563_320 Hb_011995_010--Hb_000563_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5744 10.9752 14.8763 8.39978 12.8664 9.86924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.23881 13.8045 14.4502 9.67424 8.21994

CAGE analysis