Hb_000883_020

Information

Type -
Description -
Location Contig883: 25482-29702
Sequence    

Annotation

kegg
ID tcc:TCM_015820
description Casein kinase II beta chain 1 isoform 1
nr
ID XP_012075450.1
description PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
swissprot
ID P40228
description Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1
trembl
ID A0A067LNE5
description Casein kinase II subunit beta OS=Jatropha curcas GN=JCGZ_11897 PE=3 SV=1
Gene Ontology
ID GO:0005956
description casein kinase ii subunit beta-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61446: 25678-29695 , PASA_asmbl_61447: 27971-28377 , PASA_asmbl_61448: 27807-29695 , PASA_asmbl_61449: 26541-26828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000883_020 0.0 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
2 Hb_009545_080 0.0481334623 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
3 Hb_002997_080 0.0527395029 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
4 Hb_011995_010 0.0573412543 - - dc50, putative [Ricinus communis]
5 Hb_000230_560 0.0587049758 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
6 Hb_032986_010 0.0621491299 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
7 Hb_001357_350 0.0635878909 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002518_280 0.0667543627 - - phosphate transporter [Manihot esculenta]
9 Hb_002235_250 0.0670864216 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
10 Hb_000329_320 0.0671032204 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
11 Hb_003025_110 0.0677848699 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
12 Hb_000205_190 0.0681037181 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
13 Hb_007075_040 0.0692318461 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
14 Hb_001141_020 0.0695357235 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
15 Hb_012395_230 0.0697659541 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
16 Hb_030736_100 0.0697776537 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000331_260 0.0700530833 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
18 Hb_023386_020 0.0703837334 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
19 Hb_065500_060 0.0705060492 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
20 Hb_005269_070 0.0708566494 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]

Gene co-expression network

sample Hb_000883_020 Hb_000883_020 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_009545_080--Hb_002997_080 Hb_009545_080--Hb_000230_560 Hb_004109_280 Hb_004109_280 Hb_009545_080--Hb_004109_280 Hb_000212_330 Hb_000212_330 Hb_009545_080--Hb_000212_330 Hb_009545_080--Hb_032986_010 Hb_002997_080--Hb_000230_560 Hb_000260_100 Hb_000260_100 Hb_002997_080--Hb_000260_100 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_000010_400 Hb_000010_400 Hb_011995_010--Hb_000010_400 Hb_001248_060 Hb_001248_060 Hb_011995_010--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_011995_010--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_011995_010--Hb_001409_020 Hb_000563_320 Hb_000563_320 Hb_011995_010--Hb_000563_320 Hb_003665_060 Hb_003665_060 Hb_000230_560--Hb_003665_060 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000317_470 Hb_000317_470 Hb_032986_010--Hb_000317_470 Hb_002272_130 Hb_002272_130 Hb_032986_010--Hb_002272_130 Hb_023344_120 Hb_023344_120 Hb_032986_010--Hb_023344_120 Hb_000417_130 Hb_000417_130 Hb_001357_350--Hb_000417_130 Hb_001142_030 Hb_001142_030 Hb_001357_350--Hb_001142_030 Hb_003964_070 Hb_003964_070 Hb_001357_350--Hb_003964_070 Hb_001268_240 Hb_001268_240 Hb_001357_350--Hb_001268_240 Hb_000215_110 Hb_000215_110 Hb_001357_350--Hb_000215_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.6943 32.9718 50.2724 36.3184 55.1288 57.757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.0857 51.4037 49.0575 37.0685 44.0939

CAGE analysis