Hb_001142_030

Information

Type -
Description -
Location Contig1142: 70463-80030
Sequence    

Annotation

kegg
ID rcu:RCOM_1222690
description hypothetical protein
nr
ID XP_012079620.1
description PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
swissprot
ID Q803H0
description UPF0415 protein C7orf25 homolog OS=Danio rerio GN=zgc:55781 PE=2 SV=1
trembl
ID A0A067LBH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17433 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04313: 70800-79745 , PASA_asmbl_04314: 72453-72825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001142_030 0.0 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
2 Hb_002740_030 0.0446083064 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
3 Hb_003125_120 0.0525901848 - - PREDICTED: TITAN-like protein [Jatropha curcas]
4 Hb_008453_140 0.0527555249 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
5 Hb_001163_050 0.0536060264 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
6 Hb_000580_180 0.0538875834 - - conserved hypothetical protein [Ricinus communis]
7 Hb_120410_010 0.0542842692 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
8 Hb_001357_350 0.0582036913 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000215_110 0.0592193955 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
10 Hb_010381_090 0.0611952198 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
11 Hb_000220_010 0.0628440933 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
12 Hb_000484_030 0.0632416478 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
13 Hb_000416_040 0.0655138266 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
14 Hb_002863_050 0.0656437761 - - aldose 1-epimerase, putative [Ricinus communis]
15 Hb_007416_340 0.0670750083 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000334_280 0.0680021333 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
17 Hb_003416_010 0.0681638203 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
18 Hb_011995_010 0.0684772817 - - dc50, putative [Ricinus communis]
19 Hb_000403_050 0.0687410285 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
20 Hb_005496_140 0.0691427987 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001142_030 Hb_001142_030 Hb_002740_030 Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_001142_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_120410_010 Hb_120410_010 Hb_001142_030--Hb_120410_010 Hb_000416_040 Hb_000416_040 Hb_002740_030--Hb_000416_040 Hb_002740_030--Hb_120410_010 Hb_000220_010 Hb_000220_010 Hb_002740_030--Hb_000220_010 Hb_002740_030--Hb_008453_140 Hb_002740_030--Hb_001163_050 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_000334_280 Hb_000334_280 Hb_003125_120--Hb_000334_280 Hb_000403_050 Hb_000403_050 Hb_003125_120--Hb_000403_050 Hb_003125_120--Hb_001163_050 Hb_003125_120--Hb_008453_140 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_008453_140--Hb_000220_010 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_001163_050--Hb_008453_140 Hb_005144_160 Hb_005144_160 Hb_000580_180--Hb_005144_160 Hb_011344_210 Hb_011344_210 Hb_000580_180--Hb_011344_210 Hb_000120_670 Hb_000120_670 Hb_000580_180--Hb_000120_670 Hb_002863_050 Hb_002863_050 Hb_000580_180--Hb_002863_050 Hb_007691_030 Hb_007691_030 Hb_000580_180--Hb_007691_030 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_120410_010--Hb_010381_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.53947 6.25967 7.99383 8.32003 7.93767 9.56171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.06318 11.6791 7.48341 6.19293 5.9667

CAGE analysis