Hb_000334_280

Information

Type -
Description -
Location Contig334: 249232-254540
Sequence    

Annotation

kegg
ID pop:POPTR_0001s27310g
description POPTRDRAFT_706415; hypothetical protein
nr
ID XP_012065569.1
description PREDICTED: protein FRA10AC1 [Jatropha curcas]
swissprot
ID Q70Z53
description Protein FRA10AC1 OS=Homo sapiens GN=FRA10AC1 PE=1 SV=3
trembl
ID A0A067L899
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16765 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35052: 249345-250221 , PASA_asmbl_35053: 254189-254473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_280 0.0 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
2 Hb_003125_120 0.0474572406 - - PREDICTED: TITAN-like protein [Jatropha curcas]
3 Hb_003878_070 0.0531877795 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
4 Hb_003525_010 0.0566137586 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
5 Hb_000403_050 0.0593620235 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
6 Hb_000484_030 0.0639004783 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
7 Hb_000215_110 0.0643554669 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
8 Hb_007390_010 0.0660503951 - - catalytic, putative [Ricinus communis]
9 Hb_001142_030 0.0680021333 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
10 Hb_002175_030 0.0687991914 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
11 Hb_002303_070 0.0694246618 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
12 Hb_007416_340 0.0696851961 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_001408_040 0.0705223795 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
14 Hb_000757_060 0.071397434 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
15 Hb_156973_010 0.0715569006 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001599_040 0.0717335856 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
17 Hb_000521_120 0.072229184 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_014109_040 0.0723135085 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
19 Hb_008453_140 0.0725601003 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
20 Hb_000696_230 0.073090099 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]

Gene co-expression network

sample Hb_000334_280 Hb_000334_280 Hb_003125_120 Hb_003125_120 Hb_000334_280--Hb_003125_120 Hb_003878_070 Hb_003878_070 Hb_000334_280--Hb_003878_070 Hb_003525_010 Hb_003525_010 Hb_000334_280--Hb_003525_010 Hb_000403_050 Hb_000403_050 Hb_000334_280--Hb_000403_050 Hb_000484_030 Hb_000484_030 Hb_000334_280--Hb_000484_030 Hb_000215_110 Hb_000215_110 Hb_000334_280--Hb_000215_110 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_003125_120--Hb_000403_050 Hb_001163_050 Hb_001163_050 Hb_003125_120--Hb_001163_050 Hb_008453_140 Hb_008453_140 Hb_003125_120--Hb_008453_140 Hb_001142_030 Hb_001142_030 Hb_003125_120--Hb_001142_030 Hb_007575_050 Hb_007575_050 Hb_003878_070--Hb_007575_050 Hb_110291_010 Hb_110291_010 Hb_003878_070--Hb_110291_010 Hb_007054_060 Hb_007054_060 Hb_003878_070--Hb_007054_060 Hb_003878_070--Hb_003525_010 Hb_003878_070--Hb_003125_120 Hb_000092_170 Hb_000092_170 Hb_003525_010--Hb_000092_170 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_003525_010--Hb_000215_110 Hb_036790_100 Hb_036790_100 Hb_000403_050--Hb_036790_100 Hb_156973_010 Hb_156973_010 Hb_000403_050--Hb_156973_010 Hb_000403_050--Hb_001163_050 Hb_005271_220 Hb_005271_220 Hb_000403_050--Hb_005271_220 Hb_000484_030--Hb_008453_140 Hb_001409_020 Hb_001409_020 Hb_000484_030--Hb_001409_020 Hb_001408_040 Hb_001408_040 Hb_000484_030--Hb_001408_040 Hb_000484_030--Hb_007416_340 Hb_000484_030--Hb_003125_120 Hb_000696_230 Hb_000696_230 Hb_000484_030--Hb_000696_230 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.086 7.69139 6.68948 7.78533 8.43408 11.4584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.56279 12.8569 6.56091 9.7251 6.75376

CAGE analysis