Hb_001279_150

Information

Type -
Description -
Location Contig1279: 158748-161507
Sequence    

Annotation

kegg
ID rcu:RCOM_0530930
description ATP synthase mitochondrial F1 complex assembly factor 2, mitochondrial precursor, putative
nr
ID XP_012071373.1
description PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
swissprot
ID Q8N5M1
description ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo sapiens GN=ATPAF2 PE=1 SV=1
trembl
ID A0A067LGA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10198 PE=4 SV=1
Gene Ontology
ID GO:0043461
description atp synthase mitochondrial f1 complex assembly factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08594: 158847-161733
cDNA
(Sanger)
(ID:Location)		 023_K15.ab1: 158847-159867 , 048_C07.ab1: 158847-161078

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_150 0.0 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
2 Hb_003750_050 0.0541217688 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
3 Hb_000215_110 0.0564399632 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
4 Hb_005489_060 0.0573528402 - - Anamorsin, putative [Ricinus communis]
5 Hb_007017_030 0.0582027326 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
6 Hb_000120_670 0.0592065615 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
7 Hb_002182_080 0.0602136215 - - 3-5 exonuclease, putative [Ricinus communis]
8 Hb_007390_010 0.0624348409 - - catalytic, putative [Ricinus communis]
9 Hb_000081_160 0.0652898231 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
10 Hb_003226_140 0.0662171794 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
11 Hb_002473_130 0.066875225 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
12 Hb_010964_040 0.0670233948 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
13 Hb_000156_010 0.0705263309 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
14 Hb_002811_180 0.0714325133 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001599_040 0.0716528478 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
16 Hb_000640_170 0.0724151539 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
17 Hb_003633_030 0.0735636162 - - f-actin capping protein alpha, putative [Ricinus communis]
18 Hb_000092_170 0.0737392566 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
19 Hb_000056_260 0.0738530764 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
20 Hb_003525_010 0.0754968289 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001279_150 Hb_001279_150 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_000215_110 Hb_000215_110 Hb_001279_150--Hb_000215_110 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080 Hb_000156_010 Hb_000156_010 Hb_003750_050--Hb_000156_010 Hb_003750_050--Hb_000120_670 Hb_002811_180 Hb_002811_180 Hb_003750_050--Hb_002811_180 Hb_011037_030 Hb_011037_030 Hb_003750_050--Hb_011037_030 Hb_054865_150 Hb_054865_150 Hb_003750_050--Hb_054865_150 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_002473_130 Hb_002473_130 Hb_005489_060--Hb_002473_130 Hb_005489_060--Hb_002182_080 Hb_002271_020 Hb_002271_020 Hb_005489_060--Hb_002271_020 Hb_005489_060--Hb_000215_110 Hb_000783_010 Hb_000783_010 Hb_005489_060--Hb_000783_010 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_000019_030 Hb_000019_030 Hb_000120_670--Hb_000019_030 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240 Hb_002835_080 Hb_002835_080 Hb_002182_080--Hb_002835_080 Hb_002182_080--Hb_000215_110 Hb_019280_040 Hb_019280_040 Hb_002182_080--Hb_019280_040 Hb_008092_040 Hb_008092_040 Hb_002182_080--Hb_008092_040 Hb_003108_020 Hb_003108_020 Hb_002182_080--Hb_003108_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.84304 6.05771 8.16551 12.9239 9.71112 16.256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5262 15.8364 10.9024 13.2317 8.76472

CAGE analysis