Hb_002893_080

Information

Type -
Description -
Location Contig2893: 54345-56586
Sequence    

Annotation

kegg
ID cit:102611677
description V-type proton ATPase subunit c''-like
nr
ID XP_012076641.1
description PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
swissprot
ID Q9SZY7
description V-type proton ATPase subunit c''1 OS=Arabidopsis thaliana GN=VHA-c''1 PE=1 SV=1
trembl
ID A0A067KF68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07209 PE=3 SV=1
Gene Ontology
ID GO:0016021
description v-type proton atpase subunit c 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30275: 54495-56560
cDNA
(Sanger)
(ID:Location)		 015_E12.ab1: 54641-56454 , 046_G23.ab1: 54722-56560

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_080 0.0 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
2 Hb_007017_030 0.0551925955 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
3 Hb_008406_190 0.0649617809 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
4 Hb_000599_300 0.0664921427 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
5 Hb_003633_030 0.0715177057 - - f-actin capping protein alpha, putative [Ricinus communis]
6 Hb_000116_440 0.0743022686 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
7 Hb_001579_220 0.0760316853 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
8 Hb_001369_690 0.0764326616 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
9 Hb_002473_130 0.0800773698 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
10 Hb_015934_070 0.0812997559 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
11 Hb_000103_090 0.0824008076 - - PREDICTED: protein RDM1 [Jatropha curcas]
12 Hb_003918_010 0.0830470244 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
13 Hb_001828_190 0.0844438885 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
14 Hb_000331_450 0.0844505318 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
15 Hb_033594_120 0.0847253055 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
16 Hb_027472_150 0.0861716696 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
17 Hb_000054_090 0.0863623317 - - zinc finger protein, putative [Ricinus communis]
18 Hb_001140_370 0.0887465932 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
19 Hb_000053_100 0.093465237 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
20 Hb_000441_200 0.0942044056 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002893_080 Hb_002893_080 Hb_007017_030 Hb_007017_030 Hb_002893_080--Hb_007017_030 Hb_008406_190 Hb_008406_190 Hb_002893_080--Hb_008406_190 Hb_000599_300 Hb_000599_300 Hb_002893_080--Hb_000599_300 Hb_003633_030 Hb_003633_030 Hb_002893_080--Hb_003633_030 Hb_000116_440 Hb_000116_440 Hb_002893_080--Hb_000116_440 Hb_001579_220 Hb_001579_220 Hb_002893_080--Hb_001579_220 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_000103_080 Hb_000103_080 Hb_008406_190--Hb_000103_080 Hb_003333_060 Hb_003333_060 Hb_008406_190--Hb_003333_060 Hb_010423_040 Hb_010423_040 Hb_008406_190--Hb_010423_040 Hb_008406_190--Hb_001828_190 Hb_000599_300--Hb_003633_030 Hb_007672_060 Hb_007672_060 Hb_000599_300--Hb_007672_060 Hb_001579_270 Hb_001579_270 Hb_000599_300--Hb_001579_270 Hb_002473_130 Hb_002473_130 Hb_000599_300--Hb_002473_130 Hb_000054_090 Hb_000054_090 Hb_000599_300--Hb_000054_090 Hb_033594_120 Hb_033594_120 Hb_003633_030--Hb_033594_120 Hb_000421_220 Hb_000421_220 Hb_003633_030--Hb_000421_220 Hb_003633_030--Hb_001279_150 Hb_000220_220 Hb_000220_220 Hb_000116_440--Hb_000220_220 Hb_000103_090 Hb_000103_090 Hb_000116_440--Hb_000103_090 Hb_000003_080 Hb_000003_080 Hb_000116_440--Hb_000003_080 Hb_002890_140 Hb_002890_140 Hb_000116_440--Hb_002890_140 Hb_032717_080 Hb_032717_080 Hb_000116_440--Hb_032717_080 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.0609 22.4886 25.0619 63.0406 61.6735 67.4283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.4182 80.1057 49.9643 61.6121 44.2256

CAGE analysis