Hb_000003_080

Information

Type -
Description -
Location Contig3: 40595-45091
Sequence    

Annotation

kegg
ID pop:POPTR_0001s11550g
description POPTRDRAFT_640254; hypothetical protein
nr
ID XP_012077379.1
description PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
swissprot
ID Q9LFE0
description SART-1 family protein DOT2 OS=Arabidopsis thaliana GN=DOT2 PE=1 SV=1
trembl
ID A0A067KGP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07734 PE=4 SV=1
Gene Ontology
ID GO:0005730
description u4 tri-snrnp-associated protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31360: 38863-40243 , PASA_asmbl_31361: 41676-42192 , PASA_asmbl_31362: 43485-44954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_080 0.0 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
2 Hb_000116_440 0.0745801721 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
3 Hb_000342_100 0.081111223 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
4 Hb_020581_010 0.0872556033 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000272_020 0.089870017 - - oxidoreductase, putative [Ricinus communis]
6 Hb_000220_220 0.0922915026 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
7 Hb_001842_100 0.0934477251 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
8 Hb_181288_010 0.0947668965 - - rac-GTP binding protein, putative [Ricinus communis]
9 Hb_005690_010 0.0948814788 - - PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
10 Hb_001140_370 0.0968014887 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
11 Hb_000086_380 0.0989438598 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
12 Hb_000795_060 0.0991133615 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
13 Hb_003599_040 0.0993625379 - - unnamed protein product [Vitis vinifera]
14 Hb_000103_080 0.1013673117 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
15 Hb_002685_190 0.1025570654 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
16 Hb_000656_400 0.1037715605 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
17 Hb_001579_270 0.1042606909 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
18 Hb_002890_140 0.104402818 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
19 Hb_000109_090 0.1060054744 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
20 Hb_003185_080 0.1064302927 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_080 Hb_000003_080 Hb_000116_440 Hb_000116_440 Hb_000003_080--Hb_000116_440 Hb_000342_100 Hb_000342_100 Hb_000003_080--Hb_000342_100 Hb_020581_010 Hb_020581_010 Hb_000003_080--Hb_020581_010 Hb_000272_020 Hb_000272_020 Hb_000003_080--Hb_000272_020 Hb_000220_220 Hb_000220_220 Hb_000003_080--Hb_000220_220 Hb_001842_100 Hb_001842_100 Hb_000003_080--Hb_001842_100 Hb_000116_440--Hb_000220_220 Hb_000103_090 Hb_000103_090 Hb_000116_440--Hb_000103_090 Hb_002893_080 Hb_002893_080 Hb_000116_440--Hb_002893_080 Hb_002890_140 Hb_002890_140 Hb_000116_440--Hb_002890_140 Hb_032717_080 Hb_032717_080 Hb_000116_440--Hb_032717_080 Hb_001140_370 Hb_001140_370 Hb_000342_100--Hb_001140_370 Hb_002893_050 Hb_002893_050 Hb_000342_100--Hb_002893_050 Hb_062226_140 Hb_062226_140 Hb_000342_100--Hb_062226_140 Hb_000610_050 Hb_000610_050 Hb_000342_100--Hb_000610_050 Hb_024071_020 Hb_024071_020 Hb_000342_100--Hb_024071_020 Hb_020581_010--Hb_000342_100 Hb_020581_010--Hb_000272_020 Hb_002253_100 Hb_002253_100 Hb_020581_010--Hb_002253_100 Hb_020581_010--Hb_002893_050 Hb_020581_010--Hb_001842_100 Hb_000272_020--Hb_002253_100 Hb_001579_270 Hb_001579_270 Hb_000272_020--Hb_001579_270 Hb_000329_140 Hb_000329_140 Hb_000272_020--Hb_000329_140 Hb_000103_080 Hb_000103_080 Hb_000272_020--Hb_000103_080 Hb_001579_220 Hb_001579_220 Hb_000220_220--Hb_001579_220 Hb_003494_200 Hb_003494_200 Hb_000220_220--Hb_003494_200 Hb_000680_160 Hb_000680_160 Hb_000220_220--Hb_000680_160 Hb_029879_110 Hb_029879_110 Hb_000220_220--Hb_029879_110 Hb_000853_170 Hb_000853_170 Hb_000220_220--Hb_000853_170 Hb_005291_030 Hb_005291_030 Hb_001842_100--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_001842_100--Hb_001287_080 Hb_002271_020 Hb_002271_020 Hb_001842_100--Hb_002271_020 Hb_001221_100 Hb_001221_100 Hb_001842_100--Hb_001221_100 Hb_001842_100--Hb_002893_050 Hb_000086_380 Hb_000086_380 Hb_001842_100--Hb_000086_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.7585 2.76137 1.80107 3.06881 3.88966 5.38363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.8213 7.08687 2.03823 2.87451 2.98862

CAGE analysis