Hb_001579_220

Information

Type -
Description -
Location Contig1579: 138043-144840
Sequence    

Annotation

kegg
ID rcu:RCOM_0528030
description Pantothenate kinase, putative (EC:2.7.1.33)
nr
ID XP_012085397.1
description PREDICTED: pantothenate kinase 1 [Jatropha curcas]
swissprot
ID Q8L5Y9
description Pantothenate kinase 2 OS=Arabidopsis thaliana GN=PANK2 PE=1 SV=2
trembl
ID A0A067JUT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17756 PE=4 SV=1
Gene Ontology
ID GO:0004594
description pantothenate kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13830: 138095-144631 , PASA_asmbl_13831: 138098-144747
cDNA
(Sanger)
(ID:Location)		 049_I15.ab1: 142482-144747

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_220 0.0 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
2 Hb_000329_470 0.0604968791 - - ccr4-not transcription complex, putative [Ricinus communis]
3 Hb_003050_220 0.0641367074 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
4 Hb_000015_040 0.0648630318 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
5 Hb_000220_220 0.072684135 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
6 Hb_000680_160 0.0735343187 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
7 Hb_012035_050 0.0737098679 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
8 Hb_003525_010 0.0742791202 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
9 Hb_007017_030 0.0754158072 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
10 Hb_027472_150 0.0757585929 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
11 Hb_031340_050 0.0759464576 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
12 Hb_002893_080 0.0760316853 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
13 Hb_003294_070 0.0770384381 - - hypothetical protein RCOM_1714550 [Ricinus communis]
14 Hb_003226_180 0.0773336449 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
15 Hb_002107_030 0.0775502627 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
16 Hb_155159_030 0.0776788273 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
17 Hb_002078_350 0.0780413561 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
18 Hb_000092_170 0.0787290386 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
19 Hb_032202_190 0.0793280673 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
20 Hb_005188_080 0.0796692557 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001579_220 Hb_001579_220 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050 Hb_003158_010 Hb_003158_010 Hb_000329_470--Hb_003158_010 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_167498_010 Hb_167498_010 Hb_000329_470--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_000329_470--Hb_000225_040 Hb_001369_730 Hb_001369_730 Hb_000329_470--Hb_001369_730 Hb_001902_140 Hb_001902_140 Hb_003050_220--Hb_001902_140 Hb_003050_220--Hb_000015_040 Hb_032202_190 Hb_032202_190 Hb_003050_220--Hb_032202_190 Hb_002107_030 Hb_002107_030 Hb_003050_220--Hb_002107_030 Hb_000958_110 Hb_000958_110 Hb_003050_220--Hb_000958_110 Hb_029584_050 Hb_029584_050 Hb_000015_040--Hb_029584_050 Hb_006615_020 Hb_006615_020 Hb_000015_040--Hb_006615_020 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_003761_010 Hb_003761_010 Hb_000015_040--Hb_003761_010 Hb_000116_440 Hb_000116_440 Hb_000220_220--Hb_000116_440 Hb_003494_200 Hb_003494_200 Hb_000220_220--Hb_003494_200 Hb_000220_220--Hb_000680_160 Hb_029879_110 Hb_029879_110 Hb_000220_220--Hb_029879_110 Hb_000853_170 Hb_000853_170 Hb_000220_220--Hb_000853_170 Hb_000032_270 Hb_000032_270 Hb_000680_160--Hb_000032_270 Hb_002078_350 Hb_002078_350 Hb_000680_160--Hb_002078_350 Hb_003428_030 Hb_003428_030 Hb_000680_160--Hb_003428_030 Hb_003525_010 Hb_003525_010 Hb_000680_160--Hb_003525_010 Hb_005188_080 Hb_005188_080 Hb_000680_160--Hb_005188_080 Hb_009558_030 Hb_009558_030 Hb_012035_050--Hb_009558_030 Hb_000170_070 Hb_000170_070 Hb_012035_050--Hb_000170_070 Hb_000111_420 Hb_000111_420 Hb_012035_050--Hb_000111_420 Hb_012035_050--Hb_000329_470 Hb_155159_030 Hb_155159_030 Hb_012035_050--Hb_155159_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7103 11.1674 7.84623 12.7863 16.8173 17.0208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6223 20.3807 15.7639 19.1706 13.916

CAGE analysis