Hb_012035_050

Information

Type -
Description -
Location Contig12035: 52001-67837
Sequence    

Annotation

kegg
ID rcu:RCOM_1564050
description hypothetical protein
nr
ID KDP47061.1
description hypothetical protein JCGZ_10788 [Jatropha curcas]
swissprot
ID Q9Z2D7
description Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1 SV=1
trembl
ID A0A067LF05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10788 PE=4 SV=1
Gene Ontology
ID GO:0003824
description dna glycosylase superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06304: 58465-58697 , PASA_asmbl_06305: 59470-59955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012035_050 0.0 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
2 Hb_001579_220 0.0737098679 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
3 Hb_009558_030 0.0767205412 - - myb3r3, putative [Ricinus communis]
4 Hb_000170_070 0.0828012401 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
5 Hb_000111_420 0.0891860915 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
6 Hb_000329_470 0.0899450846 - - ccr4-not transcription complex, putative [Ricinus communis]
7 Hb_155159_030 0.09323379 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
8 Hb_031340_050 0.0936724269 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
9 Hb_001009_170 0.0962523489 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_003226_180 0.0963956253 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
11 Hb_002740_180 0.097160382 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001959_210 0.097840204 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
13 Hb_012633_040 0.0990968229 - - -
14 Hb_000028_480 0.1007866501 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
15 Hb_002518_260 0.1009010874 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
16 Hb_000015_040 0.1009269816 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
17 Hb_011671_180 0.1014013418 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
18 Hb_000028_280 0.1029724809 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
19 Hb_000976_300 0.1031027644 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
20 Hb_005188_080 0.1031429228 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_012035_050 Hb_012035_050 Hb_001579_220 Hb_001579_220 Hb_012035_050--Hb_001579_220 Hb_009558_030 Hb_009558_030 Hb_012035_050--Hb_009558_030 Hb_000170_070 Hb_000170_070 Hb_012035_050--Hb_000170_070 Hb_000111_420 Hb_000111_420 Hb_012035_050--Hb_000111_420 Hb_000329_470 Hb_000329_470 Hb_012035_050--Hb_000329_470 Hb_155159_030 Hb_155159_030 Hb_012035_050--Hb_155159_030 Hb_001579_220--Hb_000329_470 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_000028_280 Hb_000028_280 Hb_009558_030--Hb_000028_280 Hb_008554_130 Hb_008554_130 Hb_009558_030--Hb_008554_130 Hb_009558_030--Hb_000329_470 Hb_000343_120 Hb_000343_120 Hb_009558_030--Hb_000343_120 Hb_009558_030--Hb_000680_160 Hb_000441_200 Hb_000441_200 Hb_000170_070--Hb_000441_200 Hb_000003_590 Hb_000003_590 Hb_000170_070--Hb_000003_590 Hb_000025_640 Hb_000025_640 Hb_000170_070--Hb_000025_640 Hb_005504_060 Hb_005504_060 Hb_000170_070--Hb_005504_060 Hb_008453_030 Hb_008453_030 Hb_000170_070--Hb_008453_030 Hb_002188_120 Hb_002188_120 Hb_000111_420--Hb_002188_120 Hb_166222_010 Hb_166222_010 Hb_000111_420--Hb_166222_010 Hb_105123_010 Hb_105123_010 Hb_000111_420--Hb_105123_010 Hb_000111_420--Hb_155159_030 Hb_012098_080 Hb_012098_080 Hb_000111_420--Hb_012098_080 Hb_003158_010 Hb_003158_010 Hb_000329_470--Hb_003158_010 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_167498_010 Hb_167498_010 Hb_000329_470--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_000329_470--Hb_000225_040 Hb_001369_730 Hb_001369_730 Hb_000329_470--Hb_001369_730 Hb_127552_030 Hb_127552_030 Hb_155159_030--Hb_127552_030 Hb_155159_030--Hb_105123_010 Hb_015934_070 Hb_015934_070 Hb_155159_030--Hb_015934_070 Hb_032258_030 Hb_032258_030 Hb_155159_030--Hb_032258_030 Hb_025240_040 Hb_025240_040 Hb_155159_030--Hb_025240_040 Hb_155159_030--Hb_001579_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.40741 2.70362 1.20078 2.74406 4.62768 4.00322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67002 4.16393 4.31456 5.18491 4.06878

CAGE analysis