Hb_008554_130

Information

Type transcription factor
Description TF Family: MYB
Location Contig8554: 76637-94400
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04260g
description hypothetical protein
nr
ID XP_012072541.1
description PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L078
description MYB family protein OS=Jatropha curcas GN=JCGZ_05339 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-like protein l

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60550: 77937-79124 , PASA_asmbl_60551: 88260-90225 , PASA_asmbl_60552: 93286-94379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008554_130 0.0 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
2 Hb_004800_080 0.0471732796 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
3 Hb_009767_110 0.0594607367 - - -
4 Hb_005496_130 0.0605009463 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
5 Hb_044728_010 0.070254172 - - -
6 Hb_001369_730 0.0704311883 - - F5O11.10, putative isoform 1 [Theobroma cacao]
7 Hb_167498_010 0.071697421 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
8 Hb_000329_710 0.0733127177 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
9 Hb_000041_110 0.0736445181 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
10 Hb_000107_330 0.0741285369 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
11 Hb_000025_640 0.0743893784 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
12 Hb_002518_260 0.0752572021 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
13 Hb_006649_050 0.0754940159 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
14 Hb_001860_050 0.0762336748 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
15 Hb_000032_520 0.0762934276 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
16 Hb_000684_470 0.0769980894 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
17 Hb_009558_030 0.0770558063 - - myb3r3, putative [Ricinus communis]
18 Hb_000329_470 0.0780473921 - - ccr4-not transcription complex, putative [Ricinus communis]
19 Hb_000792_010 0.0787810604 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
20 Hb_000680_160 0.0788471479 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_008554_130 Hb_008554_130 Hb_004800_080 Hb_004800_080 Hb_008554_130--Hb_004800_080 Hb_009767_110 Hb_009767_110 Hb_008554_130--Hb_009767_110 Hb_005496_130 Hb_005496_130 Hb_008554_130--Hb_005496_130 Hb_044728_010 Hb_044728_010 Hb_008554_130--Hb_044728_010 Hb_001369_730 Hb_001369_730 Hb_008554_130--Hb_001369_730 Hb_167498_010 Hb_167498_010 Hb_008554_130--Hb_167498_010 Hb_004800_080--Hb_167498_010 Hb_120327_010 Hb_120327_010 Hb_004800_080--Hb_120327_010 Hb_002391_310 Hb_002391_310 Hb_004800_080--Hb_002391_310 Hb_007254_070 Hb_007254_070 Hb_004800_080--Hb_007254_070 Hb_004800_080--Hb_001369_730 Hb_009767_110--Hb_044728_010 Hb_006649_050 Hb_006649_050 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_002725_120 Hb_002725_120 Hb_009767_110--Hb_002725_120 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470 Hb_000165_250 Hb_000165_250 Hb_005496_130--Hb_000165_250 Hb_000291_050 Hb_000291_050 Hb_005496_130--Hb_000291_050 Hb_005496_130--Hb_009767_110 Hb_005496_130--Hb_002725_120 Hb_000029_050 Hb_000029_050 Hb_005496_130--Hb_000029_050 Hb_000107_330 Hb_000107_330 Hb_044728_010--Hb_000107_330 Hb_000092_170 Hb_000092_170 Hb_044728_010--Hb_000092_170 Hb_000225_040 Hb_000225_040 Hb_044728_010--Hb_000225_040 Hb_001675_180 Hb_001675_180 Hb_044728_010--Hb_001675_180 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_001369_730--Hb_167498_010 Hb_000329_470 Hb_000329_470 Hb_001369_730--Hb_000329_470 Hb_001409_020 Hb_001409_020 Hb_001369_730--Hb_001409_020 Hb_001369_730--Hb_001198_100 Hb_000732_010 Hb_000732_010 Hb_001369_730--Hb_000732_010 Hb_003158_010 Hb_003158_010 Hb_167498_010--Hb_003158_010 Hb_167498_010--Hb_001409_020 Hb_167498_010--Hb_000329_470 Hb_167498_010--Hb_000225_040 Hb_167498_010--Hb_007254_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39106 5.35937 2.26109 3.17159 5.86999 5.07103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.24225 7.07225 5.70861 4.51298 5.71062

CAGE analysis