Hb_000684_470

Information

Type transcription factor
Description TF Family: Orphans
Location Contig684: 439192-443072
Sequence    

Annotation

kegg
ID rcu:RCOM_0819890
description sensory transduction histidine kinase, putative
nr
ID XP_012082256.1
description PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
swissprot
ID Q93WK5
description Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=1 SV=1
trembl
ID A0A067JYT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16446 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator-like aprr7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54033: 423170-445732 , PASA_asmbl_54034: 423595-445732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_470 0.0 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
2 Hb_005116_160 0.0511506726 transcription factor TF Family: TRAF -
3 Hb_005779_060 0.0550627464 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
4 Hb_156279_020 0.0564161574 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
5 Hb_002046_180 0.0568341295 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
6 Hb_005463_100 0.0579301566 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
7 Hb_009767_110 0.0604105622 - - -
8 Hb_002110_150 0.0642309927 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
9 Hb_000373_070 0.0654475489 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
10 Hb_009486_140 0.0658167674 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
11 Hb_000146_070 0.0660413998 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
12 Hb_002078_350 0.0666386356 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
13 Hb_000331_550 0.0678524507 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
14 Hb_027380_050 0.0687371607 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
15 Hb_001902_140 0.0695656121 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
16 Hb_008453_030 0.0715534806 - - Thioredoxin superfamily protein [Theobroma cacao]
17 Hb_000876_070 0.0720373775 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
18 Hb_032202_190 0.0735250647 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
19 Hb_011386_010 0.0738174094 - - mitochondrial carrier protein, putative [Ricinus communis]
20 Hb_002739_100 0.0742890149 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_470 Hb_000684_470 Hb_005116_160 Hb_005116_160 Hb_000684_470--Hb_005116_160 Hb_005779_060 Hb_005779_060 Hb_000684_470--Hb_005779_060 Hb_156279_020 Hb_156279_020 Hb_000684_470--Hb_156279_020 Hb_002046_180 Hb_002046_180 Hb_000684_470--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_000684_470--Hb_005463_100 Hb_009767_110 Hb_009767_110 Hb_000684_470--Hb_009767_110 Hb_000699_030 Hb_000699_030 Hb_005116_160--Hb_000699_030 Hb_000732_010 Hb_000732_010 Hb_005116_160--Hb_000732_010 Hb_001307_220 Hb_001307_220 Hb_005116_160--Hb_001307_220 Hb_001369_730 Hb_001369_730 Hb_005116_160--Hb_001369_730 Hb_005116_160--Hb_005463_100 Hb_000876_070 Hb_000876_070 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_000331_260 Hb_000331_260 Hb_156279_020--Hb_000331_260 Hb_005269_070 Hb_005269_070 Hb_156279_020--Hb_005269_070 Hb_002078_350 Hb_002078_350 Hb_156279_020--Hb_002078_350 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_000035_180 Hb_000035_180 Hb_156279_020--Hb_000035_180 Hb_012019_010 Hb_012019_010 Hb_002046_180--Hb_012019_010 Hb_002046_180--Hb_002110_150 Hb_002046_180--Hb_000876_070 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_002046_180--Hb_005463_100 Hb_005463_100--Hb_012019_010 Hb_005463_100--Hb_002110_150 Hb_000003_250 Hb_000003_250 Hb_005463_100--Hb_000003_250 Hb_005463_100--Hb_009767_110 Hb_044728_010 Hb_044728_010 Hb_009767_110--Hb_044728_010 Hb_006649_050 Hb_006649_050 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_002725_120 Hb_002725_120 Hb_009767_110--Hb_002725_120 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3038 27.7959 24.3462 21.0779 29.5855 30.692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.8229 43.7935 41.5198 26.6668 33.4331

CAGE analysis