Hb_000029_050

Information

Type -
Description -
Location Contig29: 73527-79078
Sequence    

Annotation

kegg
ID rcu:RCOM_1282040
description expressed protein, putative
nr
ID XP_002523840.1
description expressed protein, putative [Ricinus communis]
swissprot
ID Q96G74
description OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1
trembl
ID B9SCX1
description Expressed protein, putative OS=Ricinus communis GN=RCOM_1282040 PE=4 SV=1
Gene Ontology
ID GO:0004843
description otu domain-containing protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30338: 73543-79079
cDNA
(Sanger)
(ID:Location)		 024_N02.ab1: 73543-74877

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_050 0.0 - - expressed protein, putative [Ricinus communis]
2 Hb_000165_250 0.0289186168 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
3 Hb_004221_020 0.0582514319 - - protein binding protein, putative [Ricinus communis]
4 Hb_005993_050 0.0585955363 - - Protein AFR, putative [Ricinus communis]
5 Hb_023386_020 0.0587841187 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
6 Hb_005779_080 0.062591709 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
7 Hb_001409_020 0.0659821612 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
8 Hb_017358_030 0.0676430205 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
9 Hb_007657_010 0.06833232 - - ATP binding protein, putative [Ricinus communis]
10 Hb_008643_210 0.0693783872 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
11 Hb_008406_200 0.0711241839 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
12 Hb_004100_080 0.0717492752 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000072_220 0.0718810791 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
14 Hb_006649_050 0.0722275608 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
15 Hb_000291_050 0.0724461357 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
16 Hb_188063_020 0.0725208054 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005496_130 0.0726842045 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
18 Hb_004841_010 0.0727925339 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
19 Hb_002518_280 0.0732806437 - - phosphate transporter [Manihot esculenta]
20 Hb_000343_250 0.0740918678 - - PREDICTED: protein CASC3 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_050 Hb_000029_050 Hb_000165_250 Hb_000165_250 Hb_000029_050--Hb_000165_250 Hb_004221_020 Hb_004221_020 Hb_000029_050--Hb_004221_020 Hb_005993_050 Hb_005993_050 Hb_000029_050--Hb_005993_050 Hb_023386_020 Hb_023386_020 Hb_000029_050--Hb_023386_020 Hb_005779_080 Hb_005779_080 Hb_000029_050--Hb_005779_080 Hb_001409_020 Hb_001409_020 Hb_000029_050--Hb_001409_020 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030 Hb_005496_130 Hb_005496_130 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050 Hb_002835_370 Hb_002835_370 Hb_004221_020--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_004221_020--Hb_010139_040 Hb_000289_060 Hb_000289_060 Hb_004221_020--Hb_000289_060 Hb_000072_220 Hb_000072_220 Hb_004221_020--Hb_000072_220 Hb_002025_020 Hb_002025_020 Hb_004221_020--Hb_002025_020 Hb_138596_010 Hb_138596_010 Hb_005993_050--Hb_138596_010 Hb_004055_150 Hb_004055_150 Hb_005993_050--Hb_004055_150 Hb_003609_030 Hb_003609_030 Hb_005993_050--Hb_003609_030 Hb_003680_150 Hb_003680_150 Hb_005993_050--Hb_003680_150 Hb_000853_230 Hb_000853_230 Hb_005993_050--Hb_000853_230 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200 Hb_005489_020 Hb_005489_020 Hb_005779_080--Hb_005489_020 Hb_005779_080--Hb_000291_050 Hb_001123_260 Hb_001123_260 Hb_005779_080--Hb_001123_260 Hb_001227_030 Hb_001227_030 Hb_005779_080--Hb_001227_030 Hb_005779_080--Hb_005993_050 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.1172 36.0017 27.185 27.3271 43.8255 45.6107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6837 40.1704 42.1823 25.008 40.6328

CAGE analysis