Hb_005489_020

Information

Type -
Description -
Location Contig5489: 11738-15675
Sequence    

Annotation

kegg
ID rcu:RCOM_0653260
description hypothetical protein
nr
ID XP_002521337.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5R8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0653260 PE=4 SV=1
Gene Ontology
ID GO:0003677
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48148: 11684-14004 , PASA_asmbl_48149: 12322-12745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005779_080 0.0499096454 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
3 Hb_000329_370 0.054594639 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
4 Hb_001227_030 0.0596348148 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
5 Hb_021443_040 0.0620003068 - - acc synthase, putative [Ricinus communis]
6 Hb_002890_290 0.0643647168 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
7 Hb_003929_280 0.0649898664 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
8 Hb_000699_030 0.0681678494 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
9 Hb_000331_680 0.0684373572 - - Protein bem46, putative [Ricinus communis]
10 Hb_001123_260 0.0684875643 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
11 Hb_004837_180 0.0702847944 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_001004_060 0.0715094155 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
13 Hb_003030_060 0.0718826364 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
14 Hb_005653_090 0.0719903831 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
15 Hb_001546_080 0.0720204332 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
16 Hb_007590_020 0.0720574166 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
17 Hb_000343_250 0.0743618376 - - PREDICTED: protein CASC3 [Jatropha curcas]
18 Hb_004236_050 0.0747670526 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
19 Hb_008406_200 0.0757887828 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
20 Hb_002218_090 0.0764139892 - - Poly(rC)-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005489_020 Hb_005489_020 Hb_005779_080 Hb_005779_080 Hb_005489_020--Hb_005779_080 Hb_000329_370 Hb_000329_370 Hb_005489_020--Hb_000329_370 Hb_001227_030 Hb_001227_030 Hb_005489_020--Hb_001227_030 Hb_021443_040 Hb_021443_040 Hb_005489_020--Hb_021443_040 Hb_002890_290 Hb_002890_290 Hb_005489_020--Hb_002890_290 Hb_003929_280 Hb_003929_280 Hb_005489_020--Hb_003929_280 Hb_000029_050 Hb_000029_050 Hb_005779_080--Hb_000029_050 Hb_000291_050 Hb_000291_050 Hb_005779_080--Hb_000291_050 Hb_001123_260 Hb_001123_260 Hb_005779_080--Hb_001123_260 Hb_005779_080--Hb_001227_030 Hb_005993_050 Hb_005993_050 Hb_005779_080--Hb_005993_050 Hb_012194_030 Hb_012194_030 Hb_000329_370--Hb_012194_030 Hb_010712_050 Hb_010712_050 Hb_000329_370--Hb_010712_050 Hb_011537_050 Hb_011537_050 Hb_000329_370--Hb_011537_050 Hb_002085_030 Hb_002085_030 Hb_000329_370--Hb_002085_030 Hb_000441_120 Hb_000441_120 Hb_000329_370--Hb_000441_120 Hb_000025_410 Hb_000025_410 Hb_001227_030--Hb_000025_410 Hb_001227_030--Hb_002890_290 Hb_152175_010 Hb_152175_010 Hb_001227_030--Hb_152175_010 Hb_004837_180 Hb_004837_180 Hb_001227_030--Hb_004837_180 Hb_003929_110 Hb_003929_110 Hb_021443_040--Hb_003929_110 Hb_001004_060 Hb_001004_060 Hb_021443_040--Hb_001004_060 Hb_021443_040--Hb_001123_260 Hb_021443_040--Hb_000329_370 Hb_000343_250 Hb_000343_250 Hb_021443_040--Hb_000343_250 Hb_000331_680 Hb_000331_680 Hb_002890_290--Hb_000331_680 Hb_002890_290--Hb_000025_410 Hb_002890_290--Hb_152175_010 Hb_003464_090 Hb_003464_090 Hb_002890_290--Hb_003464_090 Hb_004236_050 Hb_004236_050 Hb_003929_280--Hb_004236_050 Hb_003929_280--Hb_004837_180 Hb_003927_040 Hb_003927_040 Hb_003929_280--Hb_003927_040 Hb_012384_030 Hb_012384_030 Hb_003929_280--Hb_012384_030 Hb_000803_070 Hb_000803_070 Hb_003929_280--Hb_000803_070 Hb_002217_110 Hb_002217_110 Hb_003929_280--Hb_002217_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.26639 10.5286 7.07895 5.28156 7.22384 7.7289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.23774 7.28591 6.43996 5.96459 9.54938

CAGE analysis