Hb_002518_280

Information

Type -
Description -
Location Contig2518: 224595-233641
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25530g
description POPTRDRAFT_1067959; hypothetical protein
nr
ID AIY53221.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q66GI9
description Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1
trembl
ID A0A0A1G3W1
description Phosphate transporter OS=Manihot esculenta GN=PT4;7 PE=2 SV=1
Gene Ontology
ID GO:0016021
description probable anion transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26307: 224592-228014 , PASA_asmbl_26308: 229691-233556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_280 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_000038_170 0.0498404433 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
3 Hb_023386_020 0.0520313747 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
4 Hb_010618_010 0.0531243188 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
5 Hb_000152_380 0.0547226985 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
6 Hb_000879_200 0.0560226292 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
7 Hb_004310_150 0.056340541 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
8 Hb_001409_020 0.0586799708 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
9 Hb_007575_050 0.060436495 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
10 Hb_167498_010 0.0613892196 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_000563_320 0.0637015493 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
12 Hb_003025_110 0.0637202882 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
13 Hb_000096_070 0.0641496921 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
14 Hb_005731_030 0.0654585656 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
15 Hb_003158_010 0.0660420282 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
16 Hb_001006_140 0.0662327126 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
17 Hb_000883_020 0.0667543627 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
18 Hb_003125_120 0.0671144568 - - PREDICTED: TITAN-like protein [Jatropha curcas]
19 Hb_001248_060 0.0672619604 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000225_040 0.0672893893 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]

Gene co-expression network

sample Hb_002518_280 Hb_002518_280 Hb_000038_170 Hb_000038_170 Hb_002518_280--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_002518_280--Hb_023386_020 Hb_010618_010 Hb_010618_010 Hb_002518_280--Hb_010618_010 Hb_000152_380 Hb_000152_380 Hb_002518_280--Hb_000152_380 Hb_000879_200 Hb_000879_200 Hb_002518_280--Hb_000879_200 Hb_004310_150 Hb_004310_150 Hb_002518_280--Hb_004310_150 Hb_011671_430 Hb_011671_430 Hb_000038_170--Hb_011671_430 Hb_001595_030 Hb_001595_030 Hb_000038_170--Hb_001595_030 Hb_003428_030 Hb_003428_030 Hb_000038_170--Hb_003428_030 Hb_000038_170--Hb_000879_200 Hb_001006_140 Hb_001006_140 Hb_000038_170--Hb_001006_140 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_023386_020--Hb_000879_200 Hb_001248_060 Hb_001248_060 Hb_010618_010--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_010618_010--Hb_001409_020 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010 Hb_000152_380--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_000152_380--Hb_000780_230 Hb_000152_380--Hb_010618_010 Hb_000152_380--Hb_001248_060 Hb_004221_020 Hb_004221_020 Hb_000152_380--Hb_004221_020 Hb_001926_030 Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_006620_020 Hb_006620_020 Hb_000879_200--Hb_006620_020 Hb_000879_200--Hb_001595_030 Hb_000853_230 Hb_000853_230 Hb_000879_200--Hb_000853_230 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1165 16.9688 14.1157 12.3805 24.5845 23.5831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.568 21.1193 17.7031 14.7629 15.1389

CAGE analysis