Hb_000853_230

Information

Type -
Description -
Location Contig853: 183629-186742
Sequence    

Annotation

kegg
ID rcu:RCOM_1180040
description syntaxin, putative
nr
ID XP_002523140.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q9SWH4
description Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1
trembl
ID B9SAX1
description Syntaxin, putative OS=Ricinus communis GN=RCOM_1180040 PE=3 SV=1
Gene Ontology
ID GO:0005802
description syntaxin of plants 42 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60489: 183890-186261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_230 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_006620_020 0.0348017506 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
3 Hb_004055_150 0.0542210578 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000879_200 0.0551850985 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
5 Hb_000390_180 0.0567817094 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
6 Hb_033720_010 0.0569768137 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
7 Hb_001926_030 0.0577758471 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
8 Hb_002686_250 0.0598501277 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
9 Hb_002175_030 0.0609517788 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
10 Hb_003680_150 0.0619038985 - - srpk, putative [Ricinus communis]
11 Hb_001390_110 0.0622863775 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
12 Hb_002078_020 0.0637925892 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
13 Hb_156973_010 0.0641237374 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000794_050 0.0647450578 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
15 Hb_000038_170 0.0649880886 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
16 Hb_005993_050 0.0654728035 - - Protein AFR, putative [Ricinus communis]
17 Hb_002684_040 0.066631739 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
18 Hb_003025_110 0.0677669433 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
19 Hb_006960_050 0.0677846044 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
20 Hb_000230_560 0.0687240891 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]

Gene co-expression network

sample Hb_000853_230 Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030 Hb_006620_020--Hb_000879_200 Hb_006620_020--Hb_004055_150 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_004055_150--Hb_001926_030 Hb_002686_250 Hb_002686_250 Hb_004055_150--Hb_002686_250 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050 Hb_000879_200--Hb_001926_030 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_002518_280 Hb_002518_280 Hb_000879_200--Hb_002518_280 Hb_023386_020 Hb_023386_020 Hb_000879_200--Hb_023386_020 Hb_000498_010 Hb_000498_010 Hb_000390_180--Hb_000498_010 Hb_001390_110 Hb_001390_110 Hb_000390_180--Hb_001390_110 Hb_016461_010 Hb_016461_010 Hb_000390_180--Hb_016461_010 Hb_000390_180--Hb_006620_020 Hb_001936_060 Hb_001936_060 Hb_000390_180--Hb_001936_060 Hb_033720_010--Hb_023386_020 Hb_033720_010--Hb_000879_200 Hb_033720_010--Hb_002686_250 Hb_000794_050 Hb_000794_050 Hb_033720_010--Hb_000794_050 Hb_033720_010--Hb_006620_020 Hb_001926_030--Hb_002686_250 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.67029 5.41013 5.61609 4.69651 8.59966 7.76684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.83041 5.74481 5.02031 5.281 4.22026

CAGE analysis