Hb_016461_010

Information

Type -
Description -
Location Contig16461: 4594-14186
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00800g
description hypothetical protein
nr
ID XP_012091310.1
description PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
swissprot
ID Q3T0G5
description Proline synthase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1
trembl
ID A0A067JAE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21183 PE=3 SV=1
Gene Ontology
ID GO:0042744
description proline synthase co-transcribed bacterial homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15136: 11491-14155
cDNA
(Sanger)
(ID:Location)		 052_F13.ab1: 11486-13681

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016461_010 0.0 - - PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
2 Hb_000390_180 0.0624208184 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
3 Hb_003020_010 0.0705937445 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
4 Hb_000617_240 0.0732872541 - - PREDICTED: uncharacterized protein LOC105647502 [Jatropha curcas]
5 Hb_000498_010 0.0815715525 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_011609_080 0.0816826303 - - uv excision repair protein rad23, putative [Ricinus communis]
7 Hb_001621_170 0.0874159245 - - protein binding protein, putative [Ricinus communis]
8 Hb_003029_030 0.0877102392 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
9 Hb_000794_050 0.0879158627 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
10 Hb_000368_020 0.0879184969 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
11 Hb_008406_110 0.0879471779 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
12 Hb_002007_350 0.0921222836 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
13 Hb_002686_250 0.0932762866 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
14 Hb_001329_130 0.0949561666 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006620_020 0.0953812687 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
16 Hb_003058_110 0.0960673253 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
17 Hb_006355_010 0.096709301 - - PREDICTED: protein NLRC3 [Jatropha curcas]
18 Hb_000853_230 0.0973221332 - - syntaxin, putative [Ricinus communis]
19 Hb_000771_180 0.0978345848 - - polypyrimidine tract binding protein, putative [Ricinus communis]
20 Hb_004055_150 0.0979114405 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_016461_010 Hb_016461_010 Hb_000390_180 Hb_000390_180 Hb_016461_010--Hb_000390_180 Hb_003020_010 Hb_003020_010 Hb_016461_010--Hb_003020_010 Hb_000617_240 Hb_000617_240 Hb_016461_010--Hb_000617_240 Hb_000498_010 Hb_000498_010 Hb_016461_010--Hb_000498_010 Hb_011609_080 Hb_011609_080 Hb_016461_010--Hb_011609_080 Hb_001621_170 Hb_001621_170 Hb_016461_010--Hb_001621_170 Hb_000390_180--Hb_000498_010 Hb_000853_230 Hb_000853_230 Hb_000390_180--Hb_000853_230 Hb_001390_110 Hb_001390_110 Hb_000390_180--Hb_001390_110 Hb_006620_020 Hb_006620_020 Hb_000390_180--Hb_006620_020 Hb_001936_060 Hb_001936_060 Hb_000390_180--Hb_001936_060 Hb_000390_170 Hb_000390_170 Hb_003020_010--Hb_000390_170 Hb_020367_050 Hb_020367_050 Hb_003020_010--Hb_020367_050 Hb_005288_150 Hb_005288_150 Hb_003020_010--Hb_005288_150 Hb_003020_010--Hb_000390_180 Hb_001329_130 Hb_001329_130 Hb_003020_010--Hb_001329_130 Hb_000002_040 Hb_000002_040 Hb_000617_240--Hb_000002_040 Hb_000617_240--Hb_000390_180 Hb_000794_050 Hb_000794_050 Hb_000617_240--Hb_000794_050 Hb_000120_270 Hb_000120_270 Hb_000617_240--Hb_000120_270 Hb_000617_240--Hb_000498_010 Hb_000879_200 Hb_000879_200 Hb_000498_010--Hb_000879_200 Hb_000618_030 Hb_000618_030 Hb_000498_010--Hb_000618_030 Hb_000498_010--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_000498_010--Hb_001926_030 Hb_000498_010--Hb_000794_050 Hb_007632_020 Hb_007632_020 Hb_011609_080--Hb_007632_020 Hb_001486_340 Hb_001486_340 Hb_011609_080--Hb_001486_340 Hb_006355_010 Hb_006355_010 Hb_011609_080--Hb_006355_010 Hb_011609_080--Hb_000390_180 Hb_011609_080--Hb_000498_010 Hb_000189_330 Hb_000189_330 Hb_001621_170--Hb_000189_330 Hb_001621_170--Hb_003020_010 Hb_001621_170--Hb_011609_080 Hb_000395_020 Hb_000395_020 Hb_001621_170--Hb_000395_020 Hb_001621_170--Hb_000390_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.8848 37.8252 51.651 15.3367 76.4371 54.1727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.687 32.3533 35.212 34.888 24.542

CAGE analysis