Hb_000120_270

Information

Type -
Description -
Location Contig120: 189482-196047
Sequence    

Annotation

kegg
ID pmum:103329489
description histone deacetylase 8
nr
ID XP_012078899.1
description PREDICTED: histone deacetylase 8 [Jatropha curcas]
swissprot
ID Q94EJ2
description Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1
trembl
ID A0A067KBS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13408 PE=4 SV=1
Gene Ontology
ID GO:0032041
description histone deacetylase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06095: 192912-193201 , PASA_asmbl_06096: 192078-195701 , PASA_asmbl_06097: 196606-197409
cDNA
(Sanger)
(ID:Location)		 035_M13.ab1: 196819-197409

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_270 0.0 - - PREDICTED: histone deacetylase 8 [Jatropha curcas]
2 Hb_000617_240 0.0790842908 - - PREDICTED: uncharacterized protein LOC105647502 [Jatropha curcas]
3 Hb_001083_050 0.0977681229 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
4 Hb_000181_120 0.1017417048 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
5 Hb_000487_110 0.1022926502 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
6 Hb_000732_140 0.105815868 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
7 Hb_002025_110 0.1061570804 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
8 Hb_000613_090 0.106367047 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
9 Hb_000002_040 0.1071610107 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
10 Hb_000477_030 0.1091713614 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
11 Hb_160233_010 0.1096173568 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
12 Hb_005505_050 0.1105491051 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
13 Hb_000261_220 0.1113751686 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
14 Hb_001021_170 0.113861858 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
15 Hb_002686_250 0.1139459924 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
16 Hb_005489_080 0.1142775115 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001638_250 0.1147032835 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
18 Hb_002351_020 0.1148782302 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
19 Hb_045793_010 0.1158721255 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
20 Hb_031527_020 0.1158913536 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_270 Hb_000120_270 Hb_000617_240 Hb_000617_240 Hb_000120_270--Hb_000617_240 Hb_001083_050 Hb_001083_050 Hb_000120_270--Hb_001083_050 Hb_000181_120 Hb_000181_120 Hb_000120_270--Hb_000181_120 Hb_000487_110 Hb_000487_110 Hb_000120_270--Hb_000487_110 Hb_000732_140 Hb_000732_140 Hb_000120_270--Hb_000732_140 Hb_002025_110 Hb_002025_110 Hb_000120_270--Hb_002025_110 Hb_000002_040 Hb_000002_040 Hb_000617_240--Hb_000002_040 Hb_016461_010 Hb_016461_010 Hb_000617_240--Hb_016461_010 Hb_000390_180 Hb_000390_180 Hb_000617_240--Hb_000390_180 Hb_000794_050 Hb_000794_050 Hb_000617_240--Hb_000794_050 Hb_000498_010 Hb_000498_010 Hb_000617_240--Hb_000498_010 Hb_000261_220 Hb_000261_220 Hb_001083_050--Hb_000261_220 Hb_000477_030 Hb_000477_030 Hb_001083_050--Hb_000477_030 Hb_009252_100 Hb_009252_100 Hb_001083_050--Hb_009252_100 Hb_057878_010 Hb_057878_010 Hb_001083_050--Hb_057878_010 Hb_005883_010 Hb_005883_010 Hb_001083_050--Hb_005883_010 Hb_001171_070 Hb_001171_070 Hb_001083_050--Hb_001171_070 Hb_000181_120--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000181_120--Hb_031527_020 Hb_000487_420 Hb_000487_420 Hb_000181_120--Hb_000487_420 Hb_002374_280 Hb_002374_280 Hb_000181_120--Hb_002374_280 Hb_000181_120--Hb_001083_050 Hb_004055_150 Hb_004055_150 Hb_000181_120--Hb_004055_150 Hb_000034_100 Hb_000034_100 Hb_000487_110--Hb_000034_100 Hb_000613_090 Hb_000613_090 Hb_000487_110--Hb_000613_090 Hb_008406_110 Hb_008406_110 Hb_000487_110--Hb_008406_110 Hb_000038_170 Hb_000038_170 Hb_000487_110--Hb_000038_170 Hb_005276_210 Hb_005276_210 Hb_000487_110--Hb_005276_210 Hb_054865_100 Hb_054865_100 Hb_000487_110--Hb_054865_100 Hb_077562_050 Hb_077562_050 Hb_000732_140--Hb_077562_050 Hb_000567_210 Hb_000567_210 Hb_000732_140--Hb_000567_210 Hb_002301_220 Hb_002301_220 Hb_000732_140--Hb_002301_220 Hb_000453_170 Hb_000453_170 Hb_000732_140--Hb_000453_170 Hb_005188_050 Hb_005188_050 Hb_000732_140--Hb_005188_050 Hb_000085_100 Hb_000085_100 Hb_000732_140--Hb_000085_100 Hb_002025_110--Hb_000261_220 Hb_005489_080 Hb_005489_080 Hb_002025_110--Hb_005489_080 Hb_111198_010 Hb_111198_010 Hb_002025_110--Hb_111198_010 Hb_033095_020 Hb_033095_020 Hb_002025_110--Hb_033095_020 Hb_000140_080 Hb_000140_080 Hb_002025_110--Hb_000140_080 Hb_002025_110--Hb_031527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.1848 42.2085 25.0237 9.48395 43.7802 32.7916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.4217 19.8258 29.7592 11.6106 20.4695

CAGE analysis